Protein Info for DvMF_0966 in Desulfovibrio vulgaris Miyazaki F

Annotation: metal dependent phosphohydrolase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 transmembrane" amino acids 161 to 176 (16 residues), see Phobius details PF01966: HD" amino acids 169 to 286 (118 residues), 56 bits, see alignment E=4.6e-19 PF13487: HD_5" amino acids 174 to 314 (141 residues), 100.5 bits, see alignment E=9.4e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0966)

Predicted SEED Role

"HD-GYP domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DPL4 at UniProt or InterPro

Protein Sequence (343 amino acids)

>DvMF_0966 metal dependent phosphohydrolase (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MKATIPDNISEEYYQISTEILSSFPKYRPPVDLFRFREDLAQLQPYTRKGARLTNEQVEE
VQRMCEAGDLFVSRSDHPIYSQHIVHQLDLVLVDKNLKEGEVADIFQQALALRVNEFIDQ
PVKPVFEVLYRDVMVLTEYLWQDKHRVKQFMRRLHREHSLAKHSLNTLSVGLWLLATSMG
DNLKRRDLDRSALALLLHDLGMAKVPAFILSKATPLKPDEKDKIPLHPLVGAKIMHKMGL
AFDELRQCTLEHHERLDGSGYPQKLKGEQISRLGRICAVADSFSAMISARPHAPAKELVS
AAQELAADKARYDARYTSLLLNALVTNAFGTTGKPKPEAPAKG