Protein Info for DvMF_0870 in Desulfovibrio vulgaris Miyazaki F

Annotation: RNA binding S1 domain protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 756 PF09371: Tex_N" amino acids 37 to 228 (192 residues), 190.2 bits, see alignment E=1e-59 PF16921: Tex_YqgF" amino acids 361 to 482 (122 residues), 142.5 bits, see alignment E=3.5e-45 PF14635: HHH_7" amino acids 495 to 588 (94 residues), 29.6 bits, see alignment E=2.6e-10 PF12836: HHH_3" amino acids 523 to 587 (65 residues), 101.1 bits, see alignment E=1e-32 PF03934: T2SSK" amino acids 528 to 576 (49 residues), 25 bits, see alignment 6.7e-09 PF17674: HHH_9" amino acids 592 to 661 (70 residues), 82.7 bits, see alignment E=9.4e-27 PF00575: S1" amino acids 679 to 751 (73 residues), 77 bits, see alignment E=4.3e-25

Best Hits

KEGG orthology group: K06959, uncharacterized protein (inferred from 100% identity to dvm:DvMF_0870)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DNZ4 at UniProt or InterPro

Protein Sequence (756 amino acids)

>DvMF_0870 RNA binding S1 domain protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MTPELQATASAPAAPTGPTAPAVAPAAPISAAPAALAAALSLPVSGVSAVMALLDEGATI
PFIARYRKEATGSLDEVQVVAVRDALEKARELDKRRAAVLASLEERGLLTPQLAGAVAGA
STLTALEDVYLPYRPKRVTRAEKARRRGLAPLAEALRTARPTADALALAAPHVTSHATPE
GADPELAVPDVQAALAGARDILAENCAESAPLRGALRDLFVRRAVLRARAVPGKEAEGAT
YADWFGHEERAAAMPSHRLLAMLRGEREGFLSVSVRPDDAEALDTLHRRAGIAAPGTAPR
PETAAGQVEAALADAWKRLLAPSLENELRTALRERAEAQAIGVFAANLRELIMAPPLGGR
RVLALDPGWRTGSKLVCLDAQGTLLHHEVIHPLTGDAGAERAARTLRDCCARYAMEVVAV
GNGTAGRETEAFVRNAGLPAGVDVVLVNETGASVYSASEVARREFPDHDLTVRGAVSIGR
RLMDPLAELVKIDPRSLGVGQYQHDVDQAALRRSLDEVVASCVNAVGVDANTASPELLAH
VSGIGPVLARNIVAHRAENGPFRNRRDLLKVPRLGPKAFEQAAGFLRVRGDNPLDASAVH
PERYALVARMAADLGCALADLLRRDDLRRRIRPEQYVADGVGLPTLTDILAELARPGRDP
RPSFAPFRFAEGVHSPDDLEPGMVLPGIVTNVTAFGAFVDIGVHRDGLVHVSQLSDRFVR
DPAEVVAPGRTVRVRVLEVDRARGRVSLTMKGVDQQ