Protein Info for DvMF_0713 in Desulfovibrio vulgaris Miyazaki F

Annotation: Transposase-like Mu (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 732 PF02316: HTH_Tnp_Mu_1" amino acids 21 to 128 (108 residues), 42.5 bits, see alignment E=1.2e-14 PF09299: Mu-transpos_C" amino acids 507 to 564 (58 residues), 66.4 bits, see alignment 2.8e-22

Best Hits

KEGG orthology group: K07497, putative transposase (inferred from 100% identity to dvm:DvMF_0713)

Predicted SEED Role

"bacteriophage transposase A protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DK74 at UniProt or InterPro

Protein Sequence (732 amino acids)

>DvMF_0713 Transposase-like Mu (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MASPKEAYTTRDLLPLLGISSESTVIRRASREGWTSRPRKGRGGGNEWLLASMPKSTRKA
LLDGMLRTAAQEAEKNLPALPPLDAADPRRAIAARMSPLKHCSNRQREIAMARLALIREV
ERLAVLTGVDAAIMKLVQDAADGTLPAHLMRTVRDANDRFGSGDKRGLSRRRLYAWRTLY
IKGGEDALVPKHKAKDMTVPEWAEAFLAFFRLPQKPSLTQAHRDLCRAYGDGTLTGTPPS
IHAVKRWAAKVALPELERGRRTGNALLKLQPHKRRSTKDMLPGDCYTADGTTFDAEIRNP
HNGQPFKPEVTIVLDVATRRCVGISLNYAENAQGVLDALRMACLFGGIPAMFYSDNGPGY
DNLLLTAPGTGMLARLGIERAASIPGRPQGKGLMERAVPTFCDPVAKRFATCTHRDMDAD
AAKKVYKITREALKRGARTPLMPTWDEFKTAMLERVAEYNATPHRALPMTTDASGKRRHM
SPDEAWQYFLSTGWEPVRVPADCSNDFFMPAERRIVRNGEVRFGGGIYYADDLAPHHGDA
VMVRYDVWDASRVYVWAMDGHKICDAVLDGNSIPYFQQTRIEAARAQREAAQLKRLEAKA
NRIAPGATLVLPEAEHPHVITLVADSLAPREPLPARADESAAPNITPDTAQAFTLDVAPL
RAPAPEQQPRPCFAHGHERYEWLMRHKDRWLDKDEPWLCRYVETFEYADSHDRYVHEGIA
WPGWKALAHTEN