Protein Info for DvMF_0676 in Desulfovibrio vulgaris Miyazaki F

Annotation: glycosyl transferase group 1 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 34 to 173 (140 residues), 53.6 bits, see alignment E=6.8e-18 PF13579: Glyco_trans_4_4" amino acids 35 to 169 (135 residues), 50.7 bits, see alignment E=6.7e-17 PF00534: Glycos_transf_1" amino acids 182 to 347 (166 residues), 137.6 bits, see alignment E=8.2e-44 PF13692: Glyco_trans_1_4" amino acids 195 to 333 (139 residues), 120 bits, see alignment E=2.4e-38 PF13524: Glyco_trans_1_2" amino acids 274 to 362 (89 residues), 51.6 bits, see alignment E=2.3e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0676)

Predicted SEED Role

"Glycosyl transferase, group 1 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DK37 at UniProt or InterPro

Protein Sequence (374 amino acids)

>DvMF_0676 glycosyl transferase group 1 (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MSRPKVCVFLATATLGGMGKALVQFLRTGGLDLCDPVVVAYSFGEPCETEFTSAVRDSGA
TMACLYQRWRYDPTLVAQALRIVRESRCAMLESHGYKSHVVCACLHLLTGLPWVAFVHGW
TAESWKIRAYRVLDQLVLPLATRVVTVSESLGNQLWAGARRRMVVIPNAADPEEFEGTPG
RNIRKECGIPENAIVAGVVGRLSPEKGQLHFLRALALARVRQPALQGILAGDGPDAMSLR
EEARRLGLDGFVHFLGHVAEPLSVYRALDMVVLPSLSEGMPLAALEAMMCSLPVVATRVG
GVPEVVQDGRTGILVPAADAERLAEAVTGLADDPALRARYGEAGRERVMECFTPGRRAEH
IVHLYQHLTSAVRA