Protein Info for DvMF_0592 in Desulfovibrio vulgaris Miyazaki F

Annotation: major facilitator superfamily MFS_1 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 42 to 66 (25 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 134 to 156 (23 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details amino acids 243 to 262 (20 residues), see Phobius details amino acids 274 to 291 (18 residues), see Phobius details amino acids 296 to 316 (21 residues), see Phobius details amino acids 334 to 356 (23 residues), see Phobius details amino acids 362 to 380 (19 residues), see Phobius details PF13347: MFS_2" amino acids 4 to 158 (155 residues), 29.3 bits, see alignment E=1e-10 PF07690: MFS_1" amino acids 14 to 233 (220 residues), 133 bits, see alignment E=3.8e-42 amino acids 228 to 381 (154 residues), 68.6 bits, see alignment E=1.5e-22 PF12832: MFS_1_like" amino acids 24 to 363 (340 residues), 41 bits, see alignment E=4e-14 PF05977: MFS_3" amino acids 42 to 369 (328 residues), 48.9 bits, see alignment E=1.1e-16 PF00083: Sugar_tr" amino acids 45 to 185 (141 residues), 29.8 bits, see alignment E=9.3e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0592)

Predicted SEED Role

"major facilitator superfamily protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DKX0 at UniProt or InterPro

Protein Sequence (383 amino acids)

>DvMF_0592 major facilitator superfamily MFS_1 (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MHPLLRDRNLHTIFGITLTVIMGVSSIMPALPLMARELDIPLASVGLVLTAFTLPGIVLA
PIAGVLADRLGRKRVLLPAMALFALGGSACFFARDLSTLLACRFVQGFGAAPLGVLYTTL
IGDLYEDSDRVRAMGYNAGVLSLGTAIFPAVGGLLAELGWNVPFLLPLAVLPLMLAAARL
RLPASRATQTLGEYFRSTLRIALSPRALVLFGLSLLTFVQLYGPMVTFFPVLADTRFHAA
PSRIGAIFAVSSLGTAMIASQLGRLSERFPARRLIMLSHVLYAAAMLLLPLMPGLWWLLG
PVLCFGMAQGLNLPNLSTMMTSLAPTQQRAAIMAVNGTLLRLGQTLAPLLFGLLYAGGDL
PAVFAGGAVVSCLMLALAAWRLH