Protein Info for DvMF_0519 in Desulfovibrio vulgaris Miyazaki F

Annotation: ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF09084: NMT1" amino acids 139 to 256 (118 residues), 31.5 bits, see alignment E=1.7e-11 PF04069: OpuAC" amino acids 157 to 249 (93 residues), 21.3 bits, see alignment E=1.8e-08

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 100% identity to dvm:DvMF_0519)

Predicted SEED Role

"taurine ABC transporter, periplasmic binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DKP7 at UniProt or InterPro

Protein Sequence (354 amino acids)

>DvMF_0519 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MLQMKRWFGFAAAVMALLAMAATALAAEVKPLNTTWQAEHETFVPWYAKQQGWDKAAGFD
FKMHMFDSGMAQIEALPAKQWVVGGTGGVPMMFGALRQNAYLIAIANDESVTNAVLVRPD
SPILKTKGFNPKHPDVFGTPESVKGKTILATTISSGHYAMSLWLKALGLTDKDVTIKNMD
PAQCVAAFEKGIGDAVVLWAPQMYNGLKKGWKVASDVKTAGGFVPIVLIGDKEYCDKNPE
EVARFLKVYFQGIDALRSEGVKLAPEYARFLKWAGLNMSEEEAKMDLELHPVFTLQEQLK
MFDASAGESQVQAWQKDLVKFFTELGKLKPAEGEKLLTGYYITDKFLKLVPTVK