Protein Info for DvMF_0287 in Desulfovibrio vulgaris Miyazaki F

Annotation: SurA domain protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF13623: SurA_N_2" amino acids 7 to 128 (122 residues), 40.7 bits, see alignment E=5.5e-14 PF13624: SurA_N_3" amino acids 15 to 154 (140 residues), 54.7 bits, see alignment E=2.8e-18 PF09312: SurA_N" amino acids 35 to 154 (120 residues), 53.7 bits, see alignment E=5.8e-18 PF13145: Rotamase_2" amino acids 165 to 287 (123 residues), 61.3 bits, see alignment E=3.9e-20 PF00639: Rotamase" amino acids 198 to 261 (64 residues), 29.3 bits, see alignment E=3.6e-10

Best Hits

KEGG orthology group: K03771, peptidyl-prolyl cis-trans isomerase SurA [EC: 5.2.1.8] (inferred from 100% identity to dvm:DvMF_0287)

Predicted SEED Role

"Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8)" in subsystem Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)

Isozymes

Compare fitness of predicted isozymes for: 5.2.1.8

Use Curated BLAST to search for 5.2.1.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DPF7 at UniProt or InterPro

Protein Sequence (320 amino acids)

>DvMF_0287 SurA domain protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MRSLLRTFRLAAPVLLVSLACLATVAVVAPRAEQINKIAAVVNGEMITFFDVQAQATPEL
MRLGLDRNNPAHQEAVRKVHLQVLDSLISDILMNQEAERWKITVQDGEVENELRKFVQRS
QLSQQEFERQLTQQGLSMDVMRDRVRKGILRHRLLTLMIARKIVITQEDVKKYYDAHKSQ
FVTDRTVRLGLVIFAPTANAEALADKVRTGQTTFEQLAASESIGPNPGSGGDIGTLKWTD
LAPAWKEALDGLKAGETSPVILVEGRKAMLKLVAVTTGRSQTVEEATPEIENILREPKLQ
ERFTEYTKQLHDKAVIDIRI