Protein Info for DvMF_0286 in Desulfovibrio vulgaris Miyazaki F

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF13624: SurA_N_3" amino acids 21 to 153 (133 residues), 32.2 bits, see alignment E=9.4e-12 PF13145: Rotamase_2" amino acids 166 to 278 (113 residues), 41.4 bits, see alignment E=2.4e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0286)

Predicted SEED Role

"Parvulin-like peptidyl-prolyl isomerase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DPF6 at UniProt or InterPro

Protein Sequence (415 amino acids)

>DvMF_0286 hypothetical protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MPSRFRAGCRPFGGARAILPLCAVLLVLLLSGCGEAPLPEGVVATVNEQPITLRTLEAVH
DMSSMSWSGHAPSVEQLQAQYGAVLSDLIVQELVAQALARENIAVSDGEVAEAEAEVRGD
YPAGEFEKSLVEEYIDLDLWRSRLRARIAMQKFMRLILRPTISIPLEEVETYYAAHRQDY
RLPRRVQFLVVAGPDKAAVDKARALSLGGAKPADVEAAQPSVTVREVKMRRDRLPALWSK
ELAGLAPGQASAVKQGEWGYQSFLLVGEIAEKQLELSHAYPLVERVLLERKMDEAYARWM
EAELRTARIRVSAHLLPEARGVAKGPAVPGANATGMPGVPGMPGTSGTQGQSGQDLSGQG
GQGAQALQPQEILDEGDLMDGTAPGSELDAPPPAEDGKGTRSAPANGALRKTKAK