Protein Info for Shewana3_4118 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 601 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF05960: DUF885" amino acids 62 to 590 (529 residues), 599.3 bits, see alignment E=6.7e-184

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_4118)

Predicted SEED Role

"protein of unknown function DUF885"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L2R6 at UniProt or InterPro

Protein Sequence (601 amino acids)

>Shewana3_4118 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MHKLFTPSLLICALSACSAVQPPIESTKQTTVAVAQSTAKTMAPALQAIVDQSWQLQLSA
SPEMAYGMGDKSAAGKLQDLSPEALAKLNQGQIAILAQLKALDRSKLSKEDKINAQILED
QIQNEVDLYKYKDYYLPITAESGFHAYISSIAQGRFNTLEDYQNYLGKLKALPTYFAQQT
HWLKQGLKEGITPPKATLKGFENSISAYILPVEKSSYFKPFTQYPSHFTEAQKAQLTQEG
RASVEQNVLPTYKAFYDFMTQEYMPNTRENIAANSLPDGDAFYENRVRYYTTLNMTSAEV
HELGLKEVKRIRQEMEQVIKSVGFKGSFADFLHFLRTDPQFYTTSADQLLKEAAFIAKKA
DAMLPKYFGKLPRKPYGIAPVPAEIAPKYTSGRYSGSNRDDEPGYYWVNTYALDKRPLYE
LEALTLHEAVPGHHLQISLNSELSSLPDFRRYSYISAFGEGWGLYSEYLGLEAGFYQDPY
SNFGRLTYEMWRAARLVVDTGMHAQGWSREQAIEFMASNTALSLHNVTTEIDRYITWPGQ
ALSYKIGELTIKRLRAKAEQALGDKFDIRAFHDAVLENGSVPMSVLEQQINDFIEAQKAA
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