Protein Info for Shewana3_3959 in Shewanella sp. ANA-3

Annotation: AsnC family transcriptional regulator (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 158 PF13412: HTH_24" amino acids 16 to 63 (48 residues), 51.1 bits, see alignment E=1.9e-17 PF13404: HTH_AsnC-type" amino acids 16 to 57 (42 residues), 54.5 bits, see alignment E=2.2e-18 PF01047: MarR" amino acids 22 to 63 (42 residues), 27 bits, see alignment E=8.3e-10 PF01022: HTH_5" amino acids 23 to 62 (40 residues), 22.9 bits, see alignment E=1.6e-08 PF01037: AsnC_trans_reg" amino acids 79 to 153 (75 residues), 48.8 bits, see alignment E=1.3e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_3959)

Predicted SEED Role

"Transcriptional regulator, AsnC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L2A8 at UniProt or InterPro

Protein Sequence (158 amino acids)

>Shewana3_3959 AsnC family transcriptional regulator (RefSeq) (Shewanella sp. ANA-3)
MCLALFYNPFLSELKLDKFDTAIIHSLRQDARQSVSSIAEQVNLSRSAVAERIKKLEQTG
VIRGYQVLLSESQKEGVSAYFEIQHKCPRCADVVHVFHAIPEVITCRGISGDMDLLVYVH
APSMRRLHEIREYIDTHTDIIKIKTHVVMSEWINNAGE