Protein Info for Shewana3_3824 in Shewanella sp. ANA-3

Annotation: GntR family transcriptional regulator (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 PF00392: GntR" amino acids 41 to 102 (62 residues), 56.1 bits, see alignment E=2.3e-19 PF07729: FCD" amino acids 112 to 235 (124 residues), 109.2 bits, see alignment E=1.9e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_3824)

Predicted SEED Role

"Propionate catabolism operon transcriptional regulator of GntR family [predicted]" in subsystem Methylcitrate cycle or Propionate-CoA to Succinate Module

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L1X3 at UniProt or InterPro

Protein Sequence (262 amino acids)

>Shewana3_3824 GntR family transcriptional regulator (RefSeq) (Shewanella sp. ANA-3)
MLKQETIFPTDDTQSSVAHAATSTTNKVKSLASEKSSTTLADQILVQIQTSIIKGELPPG
SKINEQTLAEKYGISRGPTREALQTLERQRLVVRAPHVGARVAQLTVSELNDLYQLRSVL
EGMACELAASRITPEQLAKLEDLLAVQETALANGDTYFQEEGDVDFHYQIIQASGNKHLQ
ETLIGGLYHLLRMYRYQCTNKNRPVKAIAEHRRIVEAIAQRDGELASLLMRRHIEQGRKN
TELRLIELQANAAAKETLANIN