Protein Info for Shewana3_3704 in Shewanella sp. ANA-3

Annotation: deoxyribodipyrimidine photolyase-related protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 525 PF04244: DPRP" amino acids 18 to 235 (218 residues), 246.2 bits, see alignment E=1.9e-77

Best Hits

KEGG orthology group: K06876, (no description) (inferred from 100% identity to shn:Shewana3_3704)

Predicted SEED Role

"FIG004436: Protein related to deoxyribodipyrimidine photolyase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L1K3 at UniProt or InterPro

Protein Sequence (525 amino acids)

>Shewana3_3704 deoxyribodipyrimidine photolyase-related protein (RefSeq) (Shewanella sp. ANA-3)
MQLRQQSQQQLQHFHTVRLILGDQLNAQHTWYQQVDPKVLYLIAELHQENTYVTHHVQKI
CAFFSAMAQFASELGAAGHRVRYLTLDDTQDFADLNALLQHYVAETGAIKFEYQRPDEYR
LLAQLSQLKLANAVVNCVDTEHFLFPFDEIDREFPQGQHRLMEHFYRRMRKRFNILMTDG
KPVGGQWNFDASNRQKLKSQDIKSLPTPLMFGHNVQDILERLTRHGINTMGKVDTHLLWP
TNRAQSLELLQYFCEYCLPAFGRFQDAMTQQHPAQWSLYHSRLSFSLNAKLISPLEVINA
VIEHYHANPFIEIAQVEGFVRQILGWREYVRGIYWANMPQYASINALEATRKLPDYFWHG
KTRMNCLHRALSPSLDYAYAHHIQRLMVIGNFCLLTEIAPDEVDKWYLGVYVDAIEWVEM
PNTRGMALFADGGIVGTKPYAASGSYINKMSDYCGSCHYKIKERSGTLACPLNSLYWRFM
DKHRAQLIHNPRIAMLYRTWDKTDEAARQAILATAEQHLAQLERL