Protein Info for Shewana3_3460 in Shewanella sp. ANA-3

Annotation: multi-sensor hybrid histidine kinase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1175 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 46 to 63 (18 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details amino acids 160 to 180 (21 residues), see Phobius details amino acids 192 to 219 (28 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details amino acids 280 to 303 (24 residues), see Phobius details amino acids 325 to 355 (31 residues), see Phobius details amino acids 377 to 399 (23 residues), see Phobius details amino acids 410 to 433 (24 residues), see Phobius details amino acids 440 to 460 (21 residues), see Phobius details amino acids 467 to 488 (22 residues), see Phobius details amino acids 496 to 513 (18 residues), see Phobius details PF12860: PAS_7" amino acids 637 to 750 (114 residues), 145.2 bits, see alignment E=1.9e-46 PF00512: HisKA" amino acids 785 to 848 (64 residues), 37.6 bits, see alignment 3.6e-13 PF02518: HATPase_c" amino acids 894 to 1026 (133 residues), 76.1 bits, see alignment E=6.1e-25 PF00072: Response_reg" amino acids 1057 to 1171 (115 residues), 38.9 bits, see alignment E=1.8e-13

Best Hits

KEGG orthology group: K00936, [EC: 2.7.3.-] (inferred from 100% identity to shn:Shewana3_3460)

Predicted SEED Role

"Sensor histidine kinase"

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L0W4 at UniProt or InterPro

Protein Sequence (1175 amino acids)

>Shewana3_3460 multi-sensor hybrid histidine kinase (RefSeq) (Shewanella sp. ANA-3)
MGNILLAWLSVDTWWISVISIAYLAVLFIVAQWGQNQAIDQWRKRPWVYSLSLGVCCTSW
AFYGTVGQAATTGAWLAPIYIGSIICLVLAWPMLMRTLQIIKSQNLTSIADFIACRFDRS
PKIAASVAMVSLFGTIPYIALQLRAISTSFDLLTGTFQSGISTAFIVTIVLIIFSILFGT
RQLSASKQNQGLVLAIAFSSIVKLFALTTVGLFATFYVFDGFSDLLARGQHLPPSSEGNS
LYFVLSQILLGAITIYALPQEFHMMMIENHHAKELKAARWMVPLYLLLINAFVLPIALAG
QISFPGGSVDADTYVLTLPLFYQQAWLGILVYIGGLAAATAMVIVAAIVLSTMISTEILT
PLLLRLPKFSSQQTPQLAGILLNLRRISIAAILLSAFAFERYIDQQNHLASIGLLSFVLL
SQFFPAAVGALYWRRATTQGAFWGMLMGSLVWLYTLLLPATFPDALWVTQGLLNIPWLTP
TALFGLTGLDNISHGLLYSLLANVGCFVLISLLKEQSVGEVLQADVFVNRKQVALERHLS
VEDLASLLHRFINKEEADALQARAKVLGSELQLATRREELVDYTRLKLSGVLGSASTRMV
MNAASRSQQVPLEDVVSIVDEANQIFEFNRELLQSGVENIEQGISVVDADMRLVAWNKRY
IELLDYPKDYVKAGIPIETLLRFNIERGIIVGDEAHELVEKRLAHMRSGSPHHFQRTMLD
GKVLEIRGQAMPGGGFVSTFTDITAHIQAEKALQLANETLEKRVESRTRELAKAKAEAEA
ANSSKTRFLAAASHDLMQPFNALTLFTEMLKQRVTSTELKDLATHIEASLNVVESLLSDL
VEISRLDSSSLKTEQSQFALNDLLSTLVNEFKVLSAEQGIDFSYQLSSCLVQSDQRLLRR
IIQNFLSNAFHYSPAGAVNRQTPLSLNASAALPKLSQADFVPKVLLGVRRLEHSLLIQVW
DNGPGIPQDKQQAIFGEFERLEQTREIPGLGLGLAICDRIAKLLGLKIALHSEVGKGTCF
SVEVPRVFAQAKPSNPSNVVKLRSEEEGANDSFNISVLVIDNDELMLKAISSLLLGWGCH
VLTARDKASAEQQLTQQVLPKLIIADYHLDDDQNGVDLVQSLLTHPVFSSQRPTCIICSA
DPSESVRQHTSSAQFSFVRKPVKATALKRLIKQLS