Protein Info for Shewana3_3422 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 887 transmembrane" amino acids 39 to 58 (20 residues), see Phobius details amino acids 214 to 233 (20 residues), see Phobius details amino acids 289 to 311 (23 residues), see Phobius details amino acids 331 to 355 (25 residues), see Phobius details amino acids 386 to 407 (22 residues), see Phobius details amino acids 435 to 453 (19 residues), see Phobius details amino acids 459 to 484 (26 residues), see Phobius details amino acids 503 to 524 (22 residues), see Phobius details amino acids 756 to 779 (24 residues), see Phobius details amino acids 806 to 830 (25 residues), see Phobius details amino acids 850 to 872 (23 residues), see Phobius details PF02687: FtsX" amino acids 290 to 412 (123 residues), 30.6 bits, see alignment E=3.2e-11 amino acids 761 to 871 (111 residues), 46.6 bits, see alignment E=3.5e-16

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to shn:Shewana3_3422)

Predicted SEED Role

"AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L0S6 at UniProt or InterPro

Protein Sequence (887 amino acids)

>Shewana3_3422 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MMSPALTPKANHSQTRNRPWLRIYWVLKVFLAHYRHAPLQAGAILLGLALAVTLLIGVKA
TNDNAIRSYSEATELLSQRADVFLSAPIGQETLDESVYFSLRQAGISQSLAVVSGRVAGL
NGQFWQIEGSDIVAALTASLSSKEEQKHNASTKQAANPKMSMGALPLAELMSGEPIVVIS
QSLANKIAPNGQLDLAPASFAPDKLKVISIDDSWGLGSAILTDISLAQTLLGMQGKLSYI
ALFSDRDKLPTLKQRLETLGITPLRASYSQQDQGQALMALTRSFHLNLNAMSMLAFVVGL
FIAYNGVRYSLMKRQRLLIQLLQQGLARREVMLALLGELLLLVVLGSLMGFILGLQLSHW
LQPMVAMTLEQLYGAHLLPGIWQWRWLAEAITLTLVAALAACLPLYFDLTRQSLAQGANR
YQQTQAHNKTHGRQFILACCLLTLAAILMPFSQSYNTSLVLLGMVAVAIPLLLPQVLHWG
VSLLLPLTRPGLKHYLLAETRELIAPLSLAMMAILLALSANVSMNTLVGSFEQTLRSWLE
TRLHADLYLRPSANHMAEVRDKLSQDPRLSGLYQQWQVEAEVSPQGAAQTIPVNLISRDD
ASIQHTSTLKQSLPDLWQTYFEGRYVLVSEPMAIKYQLQLGDSLALNVLDKTANNPVVIA
GIYYDHGNTRNELIISHELWQRAQLPVLPISLAASFHSVEPEEQTTATQRKLSEAELDEL
QGQLAVTLGLAQAQIYSQAKIKAQAIAMFKRTFSITLVLNSLTLLVAAIGLFSACLMLTQ
SRQAPLARLYSLGVSRNKLRTMVFSQMLLVVVITCLMAMPTGALLGYLLIDKITLQAFGW
TIKMIWDWFAYGKAILIALVTCTLAVLLPLYWQTRRPLIASLQQETL