Protein Info for Shewana3_3338 in Shewanella sp. ANA-3

Annotation: acriflavin resistance protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1067 transmembrane" amino acids 16 to 37 (22 residues), see Phobius details amino acids 335 to 354 (20 residues), see Phobius details amino acids 357 to 376 (20 residues), see Phobius details amino acids 385 to 410 (26 residues), see Phobius details amino acids 432 to 453 (22 residues), see Phobius details amino acids 459 to 483 (25 residues), see Phobius details amino acids 533 to 553 (21 residues), see Phobius details amino acids 863 to 883 (21 residues), see Phobius details amino acids 892 to 911 (20 residues), see Phobius details amino acids 917 to 942 (26 residues), see Phobius details amino acids 962 to 983 (22 residues), see Phobius details amino acids 995 to 1021 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 9 to 1021 (1013 residues), 568.2 bits, see alignment E=1.6e-174

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_3338)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L0J3 at UniProt or InterPro

Protein Sequence (1067 amino acids)

>Shewana3_3338 acriflavin resistance protein (RefSeq) (Shewanella sp. ANA-3)
MDTQKGILAWFARNSVAANLLMWALLIGGLFSTVLINKEVFPSFNLNLLSITVAYPGAAP
QEIEEGINIKIEEAIQDINGIKKVTSVASEGVGAITVEVEDDYDVQTVLDEAKLRLDAIS
TFPVNIEKPQIFKIEPENNVIWVSVYGDMSLHDMKELAKSVRDDLTQLPSVTRAKVTGVR
DYEIGIEVSEDKLREYGLTFSQVALAVQNSSIDLPGGSIRAEDGDILLRTKGQAYTGDDF
ANIVVTTRTDGSRVMLPQVATIKDDFEERLEYTRFNGKPAAIIEVTSVNDQNALDIAQQV
KDYVEKRRATLPANAQLDTWGDLTHYLKGRLNMMMSNMFYGALLVFVILALFLDLKLAFW
VMMGLPVCFLGTMLIMPLEPFSMTINMLTLFAFILVLGIVVDDAIVIGESAYSEVERHGH
SIDNVIRGAQKVAMPATFGVLTTIAAFIPMLMVSGPMGIIWKSIGMVVIMCLAFSLVESK
FILPAHLAHMKFRKPGEPTGFFGRFKDRFNNHVQHFIHHSYRNFLERCIQHRYNVVAAFI
GVLILSIALVASGKVRWVFFPDIPSDFIQVQLEMDEGSSEQNTLKVVQDIEEALYKMNAK
MEKDNGSEVVKHSFINMSSRTSAFIFAELTKGEDRDVDGETIAAAWREQLPELLSVKKLD
FNASGNGGGGGDISFRLTSSDLEELSAAARELKQKLATYEGVYDIADNFSSGSHEIRLKI
RPEAEALGLTLSDLARQVRYGFYGYEAQRILRNKEEIKVMVRYPLEQRRTVGYLENMLIR
TPQGKSVPFSTVAEVEKGESYASITRVDGKRAITIIANANKHKVEPSKVVNEIQQDFLPQ
LQAKYPKIQTTLDGGSLDEQNAMVGLMQGFFFALFTIYALMAVPLKSYSQPLIIMSVIPF
GIIGALFGHLIQGLAMSVLSLCGIVALAGVVVNDSLILVDFVNRAREQGQSVRQAAVDSG
CYRFRAIILTSLTTFVGLVPIILERSLQAQIVIPMATSLAFGILFSTVVTLILVPLLYII
LDDVKRTSSRFYHWWWRPKTSQERHLPANESHKVSLDAFNAPDYKQD