Protein Info for Shewana3_3308 in Shewanella sp. ANA-3

Annotation: ATPase domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 117 to 136 (20 residues), see Phobius details PF00512: HisKA" amino acids 191 to 249 (59 residues), 40.1 bits, see alignment E=3.1e-14 PF02518: HATPase_c" amino acids 293 to 397 (105 residues), 63.1 bits, see alignment E=3.2e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_3308)

Predicted SEED Role

"Sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L0G3 at UniProt or InterPro

Protein Sequence (409 amino acids)

>Shewana3_3308 ATPase domain-containing protein (RefSeq) (Shewanella sp. ANA-3)
MKFQFYRLFIFLLLSCGIVIWSFGQLAEHFAHDEYNYQIDVDDLLQNYDEQLPKIKRIPV
ASLSLPENLQSSLQLGATIALRHSSNELYYYRLDKDSSHILVLGPVQTPVPKERNTSLIL
LGLYSSLCLVALWWIWPVFRDLNHLQQAAIEFGQAPRKRPQDIHKHSAIFPLAKAFNSVS
HQIVDFIQMHKELSRTISHEVRTPLARMRFALEIIRPQIDANYANRLNEDIDDIEQLAAN
YLSFARLEHKEETLSQESQSIELFMEKLAHKYAIYQPKFNIVFHYEAQQAHFDPIAMTIA
IQNLVQNAMRFAQHDIHVHFHQQRGINRISVEDDGPGFEGKGKKLVAAFERDSQQSDTSG
YGLGLYIVKKIATWHYGTLELSRSQALGGAEISISWDDALTPKAETDAE