Protein Info for Shewana3_3054 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 125 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details amino acids 89 to 111 (23 residues), see Phobius details PF11026: DUF2721" amino acids 5 to 118 (114 residues), 121.4 bits, see alignment E=1.2e-39

Best Hits

KEGG orthology group: None (inferred from 96% identity to sbn:Sbal195_1251)

Predicted SEED Role

"FIG01057742: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KZQ9 at UniProt or InterPro

Protein Sequence (125 amino acids)

>Shewana3_3054 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MHVSLTTPALLFPAISLLLLAYTNRFFALAALIRQLSNGDKPVHKDQIKNLSQRIRIIRR
MQEAGVSSFALCVLCMIFIYIGFNKTGSVIFGASLLLLLYSLILSVIEIRISVDALNIHI
KEMSK