Protein Info for Shewana3_3001 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 117 signal peptide" amino acids 1 to 6 (6 residues), see Phobius details transmembrane" amino acids 7 to 23 (17 residues), see Phobius details amino acids 32 to 52 (21 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 95 to 112 (18 residues), see Phobius details PF04342: DMT_6" amino acids 8 to 112 (105 residues), 158.9 bits, see alignment E=2e-51

Best Hits

KEGG orthology group: K09922, hypothetical protein (inferred from 98% identity to sbm:Shew185_3114)

Predicted SEED Role

"FIG01058829: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KZK7 at UniProt or InterPro

Protein Sequence (117 amino acids)

>Shewana3_3001 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MMNPTLTTIGLLCLSNIFMTFAWYGHLKSLGSKPWIIAALVSWGIALFEYLLQVPANRIG
YTVMNVGQLKILQEVITLSLFVPFAYFYMKEPLKLDYLWAGLCILGAVYFIFRSEFN