Protein Info for Shewana3_2975 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 13 to 37 (25 residues), see Phobius details amino acids 67 to 90 (24 residues), see Phobius details amino acids 96 to 114 (19 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 153 to 183 (31 residues), see Phobius details amino acids 193 to 217 (25 residues), see Phobius details amino acids 224 to 242 (19 residues), see Phobius details amino acids 279 to 297 (19 residues), see Phobius details PF04018: DUF368" amino acids 13 to 258 (246 residues), 323.6 bits, see alignment E=4.4e-101

Best Hits

KEGG orthology group: K08974, putative membrane protein (inferred from 99% identity to she:Shewmr4_2796)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KZI1 at UniProt or InterPro

Protein Sequence (304 amino acids)

>Shewana3_2975 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MKYLLTYFKGMAMGAADVVPGVSGGTIAFITGILDTLLESVKRINPSLWGVIKSQGIKGA
FEHINGGFLLSLLAGILTSIFTFAKLISWLLVAHPIPIWSFFFGLIIISVVHMLKQVSGF
TLARLGLFALGVLAAWVITVLNPVSVEASYLNIFFGGAIAICAMVLPGISGSFILLLLGL
YPVVLAAAKNIQIDILACFAVGALLGILSFSHLLSALLRKYHDATVVFLTGLMLGTLGKI
WPWKQTLTWRTNSHGEQVPLLEQNISPLNFEQVTGQPSQLMLAIVCMLAAIALVWGLEKV
GKRD