Protein Info for Shewana3_2682 in Shewanella sp. ANA-3

Annotation: CdaR family transcriptional regulator (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 PF05651: Diacid_rec" amino acids 4 to 137 (134 residues), 174.2 bits, see alignment E=1.5e-55 PF17853: GGDEF_2" amino acids 144 to 293 (150 residues), 55.4 bits, see alignment E=1.1e-18 PF13556: HTH_30" amino acids 344 to 399 (56 residues), 64.5 bits, see alignment 9.1e-22

Best Hits

KEGG orthology group: K02647, carbohydrate diacid regulator (inferred from 100% identity to shn:Shewana3_2682)

Predicted SEED Role

"Sugar diacid utilization regulator SdaR" in subsystem D-galactarate, D-glucarate and D-glycerate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KYP0 at UniProt or InterPro

Protein Sequence (410 amino acids)

>Shewana3_2682 CdaR family transcriptional regulator (RefSeq) (Shewanella sp. ANA-3)
MYVLDQHIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVE
LSEEVASGLYGVKPGINLPLHYQGQIIGVIGITGDPAELTHYGELLKMTAEMIVEQANQQ
DQQQWENRQREEFILQLIKAQTDDDEQLHRWAKQLDIDISLPRVAAIIEVSEKQSAPTQH
TSAAFSSLVQSEQNADERNPRVSEILKQVLHLLQNPDRGNLIAMTSMSQLVILKPAFLDG
KQWDPELENQRIDKLLQRLPAQMDLHFKIALGHFFPEKGGIARSYQTAQETLNLGKQLNP
EGTKYLFEDYSLQVLLSGLKHDWRGQALASPYQQLAKADKNGQLRKTLAAYITHFGDAQQ
CANALFIHRNTLRYRLDKIQQLTKSDIHSLHGLLSLYLGQLIDTSNYRLE