Protein Info for Shewana3_2411 in Shewanella sp. ANA-3

Annotation: OmpA/MotB domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR03789: proteobacterial sortase system peptidoglycan-associated protein" amino acids 3 to 251 (249 residues), 362 bits, see alignment E=8.5e-113 PF13441: Gly-zipper_YMGG" amino acids 49 to 85 (37 residues), 32.5 bits, see alignment 8.8e-12 PF20721: C19orf12" amino acids 51 to 109 (59 residues), 30.4 bits, see alignment E=4.8e-11 PF00691: OmpA" amino acids 151 to 241 (91 residues), 60.9 bits, see alignment E=1.9e-20

Best Hits

KEGG orthology group: None (inferred from 99% identity to she:Shewmr4_2201)

Predicted SEED Role

"Outer membrane protein and related peptidoglycan-associated (Lipo) proteins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KXX1 at UniProt or InterPro

Protein Sequence (264 amino acids)

>Shewana3_2411 OmpA/MotB domain-containing protein (RefSeq) (Shewanella sp. ANA-3)
MMKKTLINILVLSVFAAPIASVSARVSLQNQPVLSEPQTEMLEQDEDDGEALIGLGGGAL
LGALVGGPVGAIIGGFTGTLIGQSVSDTDTVKTQQQHIALQRQQLASISAKQQASEQRAA
EYASTQKQLDELLAEQQQLLSELALGMNVQFRTGSSELESHFLPQLDNVAKVMKRSSESN
LELKGYADRRGDLAYNQALSEQRLLEVRGYLIKQGVAPERITTQAFGARMPLNDQQDSES
DVFDRRVTLTMQPNQGLMASRVTE