Protein Info for Shewana3_2354 in Shewanella sp. ANA-3

Annotation: phage integrase family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1030 PF00589: Phage_integrase" amino acids 521 to 656 (136 residues), 30.6 bits, see alignment E=1.5e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_2354)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KXR4 at UniProt or InterPro

Protein Sequence (1030 amino acids)

>Shewana3_2354 phage integrase family protein (RefSeq) (Shewanella sp. ANA-3)
MENPLILPHEQKSLVRLLGHQSRTAARQKSHITIIKQALAVLEHHLPELFETPPKYDRFS
AVWPQVDSDLRKVLKTETAYRRGYAFICRQLETGNRQGLWQINPPSDYLTLRRVRPLRNL
TWQHNTSVFASKIDGLLEKLDKTSDPQQCFARLLMSCICYSGLNRPRLWPALAKALNSDK
PLNGNKDLCWLTLRPSPGQNFASNLYTVQDDFEPNKAQVEVHFFPDPISLGLIKPFLNSR
TRSWRPPKSVKQCLEIIKSELKLILPKKQFQQGGICFAEAQPNVELPQVLVEYSLGRQKS
ASLPNAYWLRLFKGATGPCNVRSFAQFKKWYNSIQTDSSVTSPSHRFKLGNRYLLNQIRE
IFKQNNANPQGKRQVVLHLQELTQASLCPNEEILLQWLIHHLTTEKNEVSTANRYFGAIG
GHWLAATADIDLYSLSSEDFIDIYQEIMNRTDSQHELHYKARRFENLHLFAQQRFDLPPL
NQPLSEGSNITPHVSAAIVDEPLFSALLRQIDYIDDLDHAAQRMLKCYLLIAYRTGLRPG
EVAKLRLKDIEPSSIGWLFIRESRHGHNKTDSALRKVPLFPLLTDNEKSLMESYLRDRLI
ACHKRYNELLFHEEANPFHVVNTGQISLMVKEILSQLTGGIYYRLYHLRHTALSRLQLLA
HDDLITLPEVIKTMLPYPPSQKRIISKLIFGENRLRDRYSALAVFAGHSSPDTTFRNYLH
FTDLLLGCHLAINAQEIPEYTANNVLGVRPHRYKVMQKSGNITPVRLLPFFRKRLVPFMG
TVSGIRQSTIRQKNEVVKSSHYNQALAVLRSIDLGHDYQDVAFQYRLTPERVKRWIDAAT
ALRMLKTPRDIGRLFSSRRCNALLPADPIDISVRKDIYSALQVCRELKSSQKGNVELQWA
IQYYLTHTTSSNPSIFFNKTIEFQRFMAVVSKLFTWKRWHLRLHYQYGKPYNLWKCHRNL
QITCYTLQKINEYPEGAGSLFLHHANEQKHIKTRGDKAISQYSSPALKILFHQLAIILFK
AEQIKQWEQS