Protein Info for Shewana3_2086 in Shewanella sp. ANA-3

Annotation: beta-xylosidase-like protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1121 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF04616: Glyco_hydro_43" amino acids 57 to 387 (331 residues), 103.4 bits, see alignment E=3e-33 PF16369: GH43_C" amino acids 392 to 501 (110 residues), 75.9 bits, see alignment E=6.5e-25 PF20578: aBig_2" amino acids 528 to 594 (67 residues), 77.9 bits, see alignment 8.6e-26 amino acids 831 to 910 (80 residues), 79.8 bits, see alignment 2.2e-26 PF13385: Laminin_G_3" amino acids 649 to 815 (167 residues), 75.9 bits, see alignment E=8.2e-25 amino acids 964 to 1113 (150 residues), 99.4 bits, see alignment E=4.5e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_2086)

Predicted SEED Role

"Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)" in subsystem L-Arabinose utilization (EC 3.2.1.99)

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.99

Use Curated BLAST to search for 3.2.1.99

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KWZ7 at UniProt or InterPro

Protein Sequence (1121 amino acids)

>Shewana3_2086 beta-xylosidase-like protein (RefSeq) (Shewanella sp. ANA-3)
MVLKRSFVSASLIMALASCGGDDSSYSADDTNTFTLPPPMTSADPIIAGEVSYKNAVVHD
PSIIKDTDGTYYVFGSHLAVASSTDLMNWTQIASDGAAESSLFNTYESEIAEGTAWTGGF
VGSWAPDVIKLADGKYHFYYDFCGGPDKIDCVSRSYLGMATSDNILGPYVNQGLILKSGQ
EGAENPGANGQIYDGFVDPNAIDPAVFYDKDGGLWMTYGSYSGGIWVMQLDPATGKPLPD
QGYGTKIMGGNYSAIEGSYVIYSPESEYYYMFTSFGGFAQKDGYNIRISRAKNPNGPYVD
AAGLDMIGATAAGNIADYGVKLMGGFQFVAHPGDVGHDHGYLSPGHNSAFYDAQTGKYFL
VFHTRFPDTGEGHSVRVHELFLNSDGWLVASPQRYAPINGANIVDEIDVTGDYQFINHAK
NINTAAHKSVHVKLSRTWTNKGTVSGDVTGTYQQGDDNQITLMLDNLGTFEGVLAWQWDP
EQNKLMPTFSAISNDGASIWGVKLTDKTTEEILSASANGISLPTEATEGTIDLPTNGTRG
ATIEWQSSDESVIRADGTIIRPNVGEGDKVVTLTATIMVNGKKVTKTFQITVFAHKTYNR
IAHYSFENNLKDSLGLFSDGQPTGDRIFKAGDAIGYATGFEGQALSLDGAHGVLLPSGII
SSYEYTVSFWASPAVITGFTTAFFGAVNEQTAEDGSKFSNTWVSLLPQGWDGNTMFWSHN
IDTSGSSVLETWFDGVMGERIAENTWSHLAFSVNKGLVKVFINGVERFSSGNLANYFTGA
QGVFGLGVNYWDVPYNGLIDELKVYEAALTAEEVKALDIDKLADSELLSSATAILELGDL
SAVRENIELPVTGPYASAISWESSDPTTIDTHGGVTQPVRGEEDKVVTLTATLKLGNATQ
TKVFTATVKAKNPPTPVAIYSFEDNLNDSTANFGAGTVVGNLIGVEGGKISYVDGAVGKA
AVFDGASGIVLPNNLIKDYTYSVSMWLNPEQLNKYTTALFGYATDSSWTSVLPGGQNDYE
RMVLWSGTAWYDGRTGFVMPKSQWTHLAYTVNGGEVKVYINGELKFTGANFPNIFSVPTT
KFAVGVNFWDAPFKGAIDEIKFYDEAITEQDVADLFGESNQ