Protein Info for Shewana3_2008 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 transmembrane" amino acids 24 to 45 (22 residues), see Phobius details amino acids 62 to 84 (23 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 122 to 146 (25 residues), see Phobius details amino acids 152 to 174 (23 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details amino acids 218 to 245 (28 residues), see Phobius details amino acids 254 to 274 (21 residues), see Phobius details amino acids 336 to 362 (27 residues), see Phobius details amino acids 370 to 387 (18 residues), see Phobius details amino acids 393 to 412 (20 residues), see Phobius details PF04932: Wzy_C" amino acids 218 to 351 (134 residues), 36.7 bits, see alignment E=1.8e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_2008)

Predicted SEED Role

"FIG00564637: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KWS0 at UniProt or InterPro

Protein Sequence (431 amino acids)

>Shewana3_2008 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MDTQTYTPENSDERLVWLAITGTYFFWFLGAMYLVAPVIGWILVLRMLGRLLFYAEGCRI
SLPIISWIFAMLLMLLALVIGHLVEHLGIAQLIKSSIGWAKGWALLAVFPLIGGLQIRPQ
LIYRACCVVGKHTLILFPLFVLAWLLHLPTTLYVSPLSIVGGPGPEFFAVSLYEIDPGSG
MPRWRLFTPWAPALGMVGNFYFLFALQETNKRYRFYGLAGSILMVLISQSRLAILCCLAL
VCYFNFIRYAKSPWLYLLVSPVFLLAGIFGESVLSSIEASIHSVKAARADSTRVREALGQ
IALERWANEAIVWGHGIVERGPHMVEYMPIGSHHTWYGLLFVKGIVGAFALAVALFVSVL
SLLPSLMQSRLSAVGMAVLMILLLYTFGENLEILAYLFWPGLIVLGIAHNQAKQAATLRQ
QRLSQALAQKQ