Protein Info for Shewana3_1917 in Shewanella sp. ANA-3

Annotation: acriflavin resistance protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1035 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 339 to 357 (19 residues), see Phobius details amino acids 364 to 383 (20 residues), see Phobius details amino acids 393 to 414 (22 residues), see Phobius details amino acids 435 to 455 (21 residues), see Phobius details amino acids 467 to 494 (28 residues), see Phobius details amino acids 530 to 547 (18 residues), see Phobius details amino acids 860 to 877 (18 residues), see Phobius details amino acids 883 to 901 (19 residues), see Phobius details amino acids 907 to 929 (23 residues), see Phobius details amino acids 950 to 972 (23 residues), see Phobius details amino acids 981 to 1003 (23 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1006 (1003 residues), 518.3 bits, see alignment E=5.7e-159 PF03176: MMPL" amino acids 835 to 1009 (175 residues), 31.4 bits, see alignment E=1.5e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_1917)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KWH9 at UniProt or InterPro

Protein Sequence (1035 amino acids)

>Shewana3_1917 acriflavin resistance protein (RefSeq) (Shewanella sp. ANA-3)
MSLSTFALRQKTFVIFFTVLSIIAGIYSYFDLGKLEDPSFTVKSAVIVTLYPGANAKEVE
QLVTDKIETKLEEMESLWKLRSLSRPGSSMIFVDLKEKVNSEALPQQWDLMRRKVEDVKL
ELPVQAQISIVQDEFSEVYGMLFAVYGDNMEMAELKDHARELQRRIKAVDGVKKVQLHGI
NEQVVNIRISEERLAEANLTMLQLIEQLHSQNMPIVAGDFDLGIENLRVEQGDTFKSIED
IRNLSIQTGLNGLQSAVIRLGDIADVTMAYQDPASTLSRYNGQQAITLAVSPVNGINVVS
IGDTLKAVLADYQAKLPDGAGIGVIAYQPEEVQKSVNNFIVNLIESVVIVVVVLLIFMGW
RSAAIVGVSLLLTILFTLIYMNLTSVDLQRVSLGSFVLALGMLVDNAIVIVDLFQAKIKQ
GIERTQAVIDSIKEMAMPLLGATVIAAMGTAPVLLSQTDSAEFSLSIVQVLCSSLLLSWI
IAMVVTPLMCWYFLGKTSEVDAENAKPPSRYTLMYQQAVEWVVENPKKTILFTVPLLLGT
LLVAPLLKVNFMPSSDRAIVFLDYWLPNGGRIEQTSTDMRKVEHWLLAQPEVASISSYVG
ESAPRFSVTVEPEPLDASYGQILINMRSFDDIDTLVQRGDAWLAKEFPYAEPRFRELKLA
TKDKYSIEARFIGQDPKVLHSLANQAKDIMRQHPNLKYVRDDWRQESKVMTPQVDMHAAR
LAGVTRTDIANAINRVTEGTHVGTMRHGDDLIPIKLRSADASLEHFEHIPVRSLLGTHSV
PMGQVVESIEIKGEESMVWRRNRLPAITAQAGVSGDTASNVRQSIAADIEAIALPDGYRM
EWGGEYYDEQRSIDDLMQQNPKATLLMVIILVAMFNAFRQPLIIMITLPLAAIGIVWSLL
LLDKPFGFMAIVGMICLSGMIIKNGIVLMDQIELERRNGRRIAEAIKAATLNRTMAISMA
ALTTALGMIPLLTDRLFDQMAATIIGGLTAASVLSLFVMPALYRLFYRREEREEDALLDA
QTDNTPSVISSAKGA