Protein Info for Shewana3_1903 in Shewanella sp. ANA-3

Annotation: restriction endonuclease (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 640 PF04471: Mrr_cat" amino acids 18 to 131 (114 residues), 54.4 bits, see alignment E=6.7e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_1903)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KWG5 at UniProt or InterPro

Protein Sequence (640 amino acids)

>Shewana3_1903 restriction endonuclease (RefSeq) (Shewanella sp. ANA-3)
MSYKGPENPKLKLTEILDPKLLVDLSADVLFSLGCTNTKKMDGPGDGGRDLYAEDQSGQK
LLVQCKFHNSSELVCGSRELSELPMALMKFNYKKGIFITNAKISPQAKREYLDNYQNFNL
NFIDGDILCSIILDNPLLRSIWFDGKSFISKLLTVNLPILIREHENDLPYIINDHAEEKD
VAELLINLKTSLNHFKFSIKKTLLDTRTFEPYKAPLPLTCEEGATSLFSFSSITVEGLNT
LVEINDLTHKLSIILSEWLQQRLSSFTIRFGKPHIINRPNTQDGSKLELNIQPISFVKTK
LFFGTELDFIEANNSVNWSSINDARVTEAEHIRIFNKEFNVCIDHSIISRIEWNEQLRKL
AIIEQKKLHWEQSIFCLIDEFDVWPYKNIPEPDEQAPWISDNQMICGWLHHSLLGYLSMP
RQRNNESLNHVLKIPSESEWLEKRSLILYETSNIDGINIITPHIARHMVSIIGSDPFEFP
EQVKFICGEITSYPETIPSPILPCSRLFLLEFIVKAENVSEAEIKIIQDNIFSIDQVDDI
KIERNKSLFIFKVIPNIDELECKTTSNILDEIFLIVKLIMNILNSHIKNKFDVITDKYWL
ENYNVSLGIDWHQSTKQYFGLLNNITEPVTFDELKKIISP