Protein Info for Shewana3_1893 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1449 transmembrane" amino acids 47 to 67 (21 residues), see Phobius details PF04357: TamB" amino acids 1107 to 1446 (340 residues), 197.1 bits, see alignment E=2.7e-62

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 98% identity to shn:Shewana3_1893)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KWF5 at UniProt or InterPro

Protein Sequence (1449 amino acids)

>Shewana3_1893 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MSKPPIHEPNATAQQENQIPEQLSLEQNPTCVQPKTLKLRIWQIFKLCTRIIVYVPLSLL
VLTALLLGTEIGSRITVGLADKFVPDLALTYTSGSLNKDLTLAHASWSMDGIKVELKDLH
LAWQPTCLLQKQLCVNALTASQIDVNIDTEALSSGSTEADVTPENDQPSELVLPFGIKLD
SAELNNINIAVDKMRFSANHIQTAATWFAEGLTVEQLSSEGLAVLIPTDDSPAPDTDPQG
AGTQATGTQATDTQITGTQVTDTKAAETAATAAAKTTTAAATTQPETEKSTTTVATASAK
ASADKPIVEKKPSTETAANPQADKQTDENADKQASTEEWALAHLPQVFMPFPVDVKHLSL
DNSRLQIGPREDLFSHIELQGQFAKYQLTLEKLLLAHSYGEVSVVGQLALEQDYPLALEV
QANVTQVAELPELTHQQLSLTLSQSVGQLGIHALAKGDVDFSLNGQLTLKDPTLPYKVKL
EKVRAQWPLQHAEYLVSDLNLDSQGSLTQQAATLNGNVITPFHKVLAISSELHHQGAKLD
IKQFTAKGELGSVDVTGELDYAKAITWKAKVLLDNLKLQEITLPETAQTPESTPTKDAKA
PSTNTDKPAPAITNAPAPATTTAAATTNAKATTTTSASASASASATSSLPNSLISGQLQT
TGRLLDKQWQVALTDTQLSGTMQGYPFDITADVSINDKLYISAKGVNAKVLGSTLTLAGE
TNKTWNLEGKLQVPDFGLWLPQASGQLQADINVTGEEKHPQVELTAQLVDLVHQNIKLRE
STLKAYYKPLDAHEFALSLKSKALQLGSQSLDTVTLGSKGDIQNQKLTLSATGDLGLELG
VTSQYDMKKSQLQAQVNKINLATPVGRWEIDKDILVGWDQNKSKGNISPFCLVNPNSKVC
LDNQVTIGKTGEAQLSYAGNLGKLLVPVLPNNMQWDGSSSLLANFAWAAGRKPTANVDFN
FTPGSIKLKRAKNREVTINYQQLDFKANLDAKRLLSSISFESEDVASWQSEVTVNVTPDR
TLSGYANIKQINLQPLGEFFPQLNTLEGLLTSRLNFAGTLDAPEVSGNVSLTQGALALTA
NPTLINKIDMSMDLGGQQASLKGRWMMGNGLGRVTGDMRWPQGQFSGELAIKGDKLAVIQ
PPLTLLDVSPDLTIAFSSQQLELKGVVDVPSGNIKIVQLAEGGVALSEDVVFDDSIAAAQ
PKASPYAIVADLNINVGNDLKVDGMGLKGKLQGTLKLQQQAFRPPLLFGDIKVKQGSYKF
MGQTLKIRTGEVQFVGPTSVPNLNIEAIREIKSEDLVAGVRVTGTPARPVVTLFSNPAKE
QAEILSYIIKGSGFNSSNNEQNNSLMMGAALGLGSQVGGGGAINNIGSTATGIIEEFGFS
NVQLDTNDEGRVAISGFIGDNLMVKYGVGVFNPGYEMTVRYYLLSQLYLETVSGTLGQSL
DIYYNFNIK