Protein Info for Shewana3_1787 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 transmembrane" amino acids 70 to 88 (19 residues), see Phobius details PF21083: ZapC_N" amino acids 3 to 89 (87 residues), 100 bits, see alignment E=6.8e-33 PF07126: ZapC_C" amino acids 91 to 170 (80 residues), 104.8 bits, see alignment E=2.1e-34

Best Hits

Swiss-Prot: 93% identical to ZAPC_SHEON: Cell division protein ZapC (zapC) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: None (inferred from 99% identity to shm:Shewmr7_1757)

Predicted SEED Role

"FIG01056851: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KW51 at UniProt or InterPro

Protein Sequence (177 amino acids)

>Shewana3_1787 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MLLLPQKDWHWKYNDSYGVLGVSLGAEIEFLTAYKAKSLIPDALSSMEFNIAHAKFYMSL
LDKLPKTLSLTDAAIVQIALNATAAHFMLTPQMPKSWFFDCSDVCVFSDVGKVFELKCQK
QRALVLVIENTLQSALVMLLSPECVLSGAKTMTQFETIKVMHNRLHPLRVQRHVVAA