Protein Info for Shewana3_1567 in Shewanella sp. ANA-3

Annotation: chromosome segregation protein SMC (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1142 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 545 (544 residues), 575 bits, see alignment E=1.7e-176 amino acids 569 to 1133 (565 residues), 573 bits, see alignment E=6.7e-176 PF02463: SMC_N" amino acids 3 to 682 (680 residues), 131.6 bits, see alignment E=4.5e-42 amino acids 793 to 1126 (334 residues), 110.8 bits, see alignment E=1e-35 PF13476: AAA_23" amino acids 5 to 227 (223 residues), 67.4 bits, see alignment E=4.1e-22

Best Hits

KEGG orthology group: K03529, chromosome segregation protein (inferred from 100% identity to shn:Shewana3_1567)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KVI2 at UniProt or InterPro

Protein Sequence (1142 amino acids)

>Shewana3_1567 chromosome segregation protein SMC (RefSeq) (Shewanella sp. ANA-3)
MRLKQIKLAGFKSFVDPTKIPFLQALSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS
MSDVIFNGSSARKPVSVAGVELVFENKEGRLAGQYASYEEISVKRQVSRDGESWYFLNGQ
KCRRKDITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAGISRYKERRRET
ENRIRHTRENLERLGDIRSELAKQLEKLSQQAKAAKQYRELKQAERKTHAELLVMRYQEL
QSQMASLSEQISSLELQQAAAQSLAQTGELESTELQLKLSQLAEQEQQAVEAYYLTGTEI
AKLEQQLQSQKQRDAQLHNQLEQLSEQIIQNQAKLAAYQASFQALEAELSQLAPQHELQQ
EMMDELQAQWEMSVSRSEAQSESARVLAAAVAQHKLQLELHRSKLAHQQQLNAHKTQLHQ
EQQQELASLNAHALEDNSASLNDEITQLEQALAEQVEINQGFESTLAAVTHTLDVARGEF
EQLSQRLTSMRARFELVEQWLAKQEELSDKPQLWQSIQVENGWEAAAELALQGLMTLPVG
VNANEIGFYADAALSADVHLDGSPILDAKLNLAPWLKGLKWADNLASAQAQLPSLAADER
IVTADGYLLGKGFLIAKQDNSQSLVQLSKEQTQLSEAIAECEQAKAIQQAKLDELAQQLT
QVRDSLSQGTKRLHQLQLDKATKSTQLNNAEAQAKQREAKRGQLAETVARTQAELAELAE
QLMLLAEQEDELAEALEVSLEQQQQQSQDAQGDMARHQALKAQIGDAERRLASLNASLQS
VTTRMAVSTEQIELQRVRVSELVHSKETLSAQLANVAAQEGDQQTVQLSEQLAQLLNQQQ
GQQQALKSLRSQQSSLTETLNSIGLKQKQELGKLEGLTQSLSTLKLRREGLKGQADSQLA
ALSEQQIVLAQIVDSLPADGHPDKWQRDLDQIRQKIIRLGAINLAAIEEFEQQSERKSYL
DHQDEDLNNGLATLEEAIRKIDKETRTRFKTTFDAVNEDLGRLFPKVFGGGRAYLALTED
DLLETGVTIMAQPPGKKNSTIHLLSGGEKALTALSLVFAIFRLNPAPFCMLDEVDAPLDD
ANVERFCRLLKEMSQSVQFIYISHNKITMEMADQLIGVTMHEPGVSRIVAVDLEQAVAMA
DA