Protein Info for Shewana3_1352 in Shewanella sp. ANA-3

Name: fliP
Annotation: flagellar biosynthesis protein FliP (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 46 to 78 (33 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 189 to 212 (24 residues), see Phobius details amino acids 223 to 244 (22 residues), see Phobius details PF00813: FliP" amino acids 51 to 243 (193 residues), 272.6 bits, see alignment E=1e-85 TIGR01103: flagellar biosynthetic protein FliP" amino acids 51 to 247 (197 residues), 288.2 bits, see alignment E=1.7e-90

Best Hits

Swiss-Prot: 66% identical to FLIP_PSEAE: Flagellar biosynthetic protein FliP (fliP) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K02419, flagellar biosynthetic protein FliP (inferred from 98% identity to son:SO_3218)

Predicted SEED Role

"Flagellar biosynthesis protein FliP" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KUW7 at UniProt or InterPro

Protein Sequence (248 amino acids)

>Shewana3_1352 flagellar biosynthesis protein FliP (RefSeq) (Shewanella sp. ANA-3)
MMKYILTFIGVSTLLFAASVGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFIPA
MVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPY
IDEQLTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDISGYQNINSPEEAPMSVLVPAFIT
SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVM
GTLANSFG