Protein Info for Shewana3_1270 in Shewanella sp. ANA-3

Annotation: major facilitator transporter (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 494 transmembrane" amino acids 31 to 54 (24 residues), see Phobius details amino acids 65 to 86 (22 residues), see Phobius details amino acids 98 to 117 (20 residues), see Phobius details amino acids 123 to 144 (22 residues), see Phobius details amino acids 156 to 179 (24 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details amino acids 220 to 240 (21 residues), see Phobius details amino acids 247 to 268 (22 residues), see Phobius details amino acids 291 to 315 (25 residues), see Phobius details amino acids 325 to 345 (21 residues), see Phobius details amino acids 355 to 375 (21 residues), see Phobius details amino acids 387 to 411 (25 residues), see Phobius details amino acids 431 to 450 (20 residues), see Phobius details amino acids 464 to 487 (24 residues), see Phobius details PF07690: MFS_1" amino acids 36 to 436 (401 residues), 166.8 bits, see alignment E=3.2e-53

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_1270)

Predicted SEED Role

"Putative transmembrane efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KUN5 at UniProt or InterPro

Protein Sequence (494 amino acids)

>Shewana3_1270 major facilitator transporter (RefSeq) (Shewanella sp. ANA-3)
MIALSRWRCNMNDDSHLFTTCTAPARRPPWLGLSVLLLAGFVTIFDLFVVNVAIPSMQAN
LGASFAQIGFIVAGYELAFGVLLIMGGRLGDLFGRRRLFIVGMAGFTLASAMCGLAPSAE
ILIVARVLQGLAAALLFPQVYASIRVNFDGDDSRRAFGLLGMTLGLAAIAGQVLGGWLVH
ADLFGLSWRTIFLINVPIGLFAITAASCIPESRAEQSPALDWSGVILVSSGLALLLVPLI
EGPGQGWPAWSLWSLGGAVALMVTFYRYQERQRIAGRFPLVDMQLMRQRRFALGALLVLL
VYSTSSSFFLSFALLVQTGLGLDPFVAGSIFAPCSVGFVLASLTAPRLVALWGARAIVAG
ALVYAISIGLLITQVQMAGAELLPVTLIPVLIIVGAGQGLIMTPLLNLVLGFVKENQAGM
ASGVISTVQQVGAALGVAIVGILFGTALTASNGALAQADQYASAFVSGMLYNLGAALLIC
FLLLILARSQRSAS