Protein Info for Shewana3_1244 in Shewanella sp. ANA-3

Annotation: phage integrase family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 PF13356: Arm-DNA-bind_3" amino acids 6 to 93 (88 residues), 60.3 bits, see alignment E=2.4e-20 PF14659: Phage_int_SAM_3" amino acids 99 to 155 (57 residues), 40 bits, see alignment E=5.6e-14 PF00589: Phage_integrase" amino acids 205 to 370 (166 residues), 60.1 bits, see alignment E=3.7e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_1244)

Predicted SEED Role

"Integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KUL0 at UniProt or InterPro

Protein Sequence (399 amino acids)

>Shewana3_1244 phage integrase family protein (RefSeq) (Shewanella sp. ANA-3)
MAKIKLTKSAIDAAKPQAQPVELRDTLVPGFLCKITPAGRKVFMLQYRTNAGERRKPALG
LYGELTVEQARSLAQSWLAEVRRGGDPGAAKAEARKAPTVKELCVKFMEDYSRHRNKPST
QRGYQGNIDRNIIPILGRMKVQDVKRADVAAMMKKLDYKPGEANKALSVLRKMFNLAEIW
GYRTDGSNPCRHIPLYTGGKTTRLITDEEMVKLFKHLDQIEAEGLVPYVVPLAIRLQFEF
AARRSEIVLLEWEWIDLENRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRQPGARYVLPSP
RNPLTHLTYGEYYGGWTRTLKAAGVPHVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTV
TMFMRYIHTEDDPVRQAAELVANRRKTITGASRVKETAV