Protein Info for Shewana3_1085 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF00497: SBP_bac_3" amino acids 32 to 244 (213 residues), 73.2 bits, see alignment E=1.2e-24

Best Hits

KEGG orthology group: K02030, polar amino acid transport system substrate-binding protein (inferred from 100% identity to shn:Shewana3_1085)

Predicted SEED Role

"ABC-type amino acid transport/signal transduction systems, periplasmic component/domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KU51 at UniProt or InterPro

Protein Sequence (264 amino acids)

>Shewana3_1085 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MNLKSLIKISLVLQLLGLSTPCMAGRELTLVATNYPPFYTNELPDQGGVALVVKEAFKRR
GYNASVKFYPFARAALLVKTGQADGIIGLWYRKEREQWAHYSDPIQAVQIVFYKRKDNPL
SFSQLTELKPFTIGIGRGYANPPEIAGAGLTTEEGNSDEMNLKKLFLKRIDLVLIGHNLA
EYLIKQHGDEYTDAFEQVGEPIATEVFHLGVSLAVSDQITLVAEFNKGLESMKKDGRLAA
ILSRFPQLLSTSDPIEKIRTQAHP