Protein Info for Shewana3_0928 in Shewanella sp. ANA-3

Annotation: cytochrome bd ubiquinol oxidase, subunit I (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 56 to 77 (22 residues), see Phobius details amino acids 97 to 118 (22 residues), see Phobius details amino acids 127 to 148 (22 residues), see Phobius details amino acids 187 to 208 (22 residues), see Phobius details amino acids 220 to 238 (19 residues), see Phobius details amino acids 322 to 345 (24 residues), see Phobius details amino acids 357 to 378 (22 residues), see Phobius details amino acids 406 to 426 (21 residues), see Phobius details PF01654: Cyt_bd_oxida_I" amino acids 9 to 437 (429 residues), 566.4 bits, see alignment E=1.6e-174

Best Hits

KEGG orthology group: K00425, cytochrome bd-I oxidase subunit I [EC: 1.10.3.-] (inferred from 100% identity to shn:Shewana3_0928)

MetaCyc: 72% identical to cyanide insensitive ubiquinol oxidase subunit I (Pseudomonas putida KT2440)
RXN-6883 [EC: 1.10.3.11]

Predicted SEED Role

"putative Cytochrome bd2, subunit I" in subsystem Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.10.3.-

Use Curated BLAST to search for 1.10.3.- or 1.10.3.11

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KTP4 at UniProt or InterPro

Protein Sequence (446 amino acids)

>Shewana3_0928 cytochrome bd ubiquinol oxidase, subunit I (RefSeq) (Shewanella sp. ANA-3)
MFDFDATVLARIQFAFTVSFHIIFPAITIGLATYLAVLEGLWLKTNNQIYQQLYQFWVKI
FAINFGMGVVSGIVMAYQFGTHWSGFSAFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGQ
NKVGKKLHFFATCMVATGTVISTFWILASNSWMHTPQGVEIIDNRVVPIDWWQIVFNPSF
PYRLTHMTVAAFLSSAFFVGASAAWHLLKGNDTPAIRKMLSMAMWMALIVAPLQAVIGDF
HGLNTLEYQPVKIAAMEGHWRNEGDEPTPLILFAMPDMDKQTNHFSLEIPGLASLILKHD
ITKQVPALTEFPAEDWPNVSLVFWSFRVMVGLGVLMILAGVWSLYLRRKQTLYSNRLFLR
LVLLLGPAGLIATLAGWFTTELGRQPWVIQGLMRTQDAVSSHSVTHLSISLMMFVICYFG
IFGVGYRYMMRLISKGPIAQGIEHHG