Protein Info for Shewana3_0920 in Shewanella sp. ANA-3

Annotation: FMN-binding domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF04205: FMN_bind" amino acids 93 to 171 (79 residues), 41.7 bits, see alignment E=7.3e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to shm:Shewmr7_0956)

Predicted SEED Role

"PROBABLE SIGNAL PEPTIDE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KTN6 at UniProt or InterPro

Protein Sequence (183 amino acids)

>Shewana3_0920 FMN-binding domain-containing protein (RefSeq) (Shewanella sp. ANA-3)
MAHTYLNSLWFMPMVVVAAPAFSADYLTVAQAQALIFDKAAVFSERPTLLSSDAKDQIKD
LSGVRQRQDQQPIWKVEKDGQFLGWFVVDDVVGKHEYITYAIGISPQGEVLGLEVLSYRE
THGGQVREASWRDQFHGKTLKDPFKLDEDVSNISGATLSCRNLLDGVKRLLVIHQLFLSQ
SVA