Protein Info for Shewana3_0912 in Shewanella sp. ANA-3

Annotation: aromatic amino acid permease (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 51 (23 residues), see Phobius details amino acids 81 to 103 (23 residues), see Phobius details amino acids 117 to 137 (21 residues), see Phobius details amino acids 144 to 162 (19 residues), see Phobius details amino acids 182 to 204 (23 residues), see Phobius details amino acids 216 to 238 (23 residues), see Phobius details amino acids 272 to 293 (22 residues), see Phobius details amino acids 305 to 325 (21 residues), see Phobius details amino acids 331 to 353 (23 residues), see Phobius details amino acids 365 to 389 (25 residues), see Phobius details PF03222: Trp_Tyr_perm" amino acids 1 to 384 (384 residues), 306.4 bits, see alignment E=3.4e-95 PF01490: Aa_trans" amino acids 4 to 355 (352 residues), 35.7 bits, see alignment E=4.3e-13

Best Hits

KEGG orthology group: K03834, tyrosine-specific transport protein (inferred from 100% identity to shm:Shewmr7_0948)

Predicted SEED Role

"Tyrosine-specific transport protein" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KTM8 at UniProt or InterPro

Protein Sequence (391 amino acids)

>Shewana3_0912 aromatic amino acid permease (RefSeq) (Shewanella sp. ANA-3)
MLGSIAIVAGTAIGAGMLALPLATAALGMVPAILLMVVIWGLSAYTSLLMLEINLRSGVG
DNVHAITGKLLGKKGQMVQGASFLSLLFALTAAYLTGGSSLLVLKAKNMFDLVLDNQLAV
VLFTLVLGGFAALGVAWVDKASRFLFSLMILLLIVVVLFLLPEVSISSMATSAVAESMTS
SWMAAIPVVFTSFGFHVCIATLVRYLDGDAVSLRKVLLIGSTIPLACYIFWLLVTLGTVG
GTEISSFNGSLPALISALQEIAHTPWISKCISLFADLALITSFLGVTLSLYDFVAELTRA
KKTFLGRAQTWLLTFVPPLLCALYVPEGFVAVLGFAAVPLVVMIIFLPIVMALRQRQATP
QGYQVSGGTFSLGIAGLLGAVIIGAQLFVAL