Protein Info for Shewana3_0683 in Shewanella sp. ANA-3

Annotation: BolA family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 83 PF01722: BolA" amino acids 17 to 74 (58 residues), 50.3 bits, see alignment E=1.1e-17

Best Hits

Swiss-Prot: 57% identical to IBAG_ECOLI: Acid stress protein IbaG (ibaG) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to son:SO_3949)

Predicted SEED Role

"YrbA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KT02 at UniProt or InterPro

Protein Sequence (83 amino acids)

>Shewana3_0683 BolA family protein (RefSeq) (Shewanella sp. ANA-3)
MECSLIEQILRDALALDEVHASSDGSHYKVIAVGECFDGMSRVKQQQAIYAPLMSYIASG
ELHALTIKTFTPTQWKREKIFNS