Protein Info for Shewana3_0283 in Shewanella sp. ANA-3

Annotation: ATPase domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 123 to 145 (23 residues), see Phobius details PF00672: HAMP" amino acids 144 to 196 (53 residues), 28.2 bits, see alignment 2.8e-10 PF00512: HisKA" amino acids 205 to 265 (61 residues), 32.4 bits, see alignment E=1.2e-11 PF02518: HATPase_c" amino acids 310 to 410 (101 residues), 71.9 bits, see alignment E=9.2e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to she:Shewmr4_0282)

Predicted SEED Role

"Sensor protein basS/pmrB (EC 2.7.3.-)" in subsystem Lipid A modifications or Orphan regulatory proteins (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KRV7 at UniProt or InterPro

Protein Sequence (411 amino acids)

>Shewana3_0283 ATPase domain-containing protein (RefSeq) (Shewanella sp. ANA-3)
MLFALYRQLIIEQQYQVTQYLESETQRYQQLALTVDRRSFAAQIRAADPQTALIAWRNSY
DMVGALSFMPEGMPMLPQTRDFPILTGGPDKLHILTGGLVMTRYGPVLIATRTDNLATLI
DKFISAAATAVMLTIVLTLALGYLFSKAILRRLVQYNRLSEQIERGHYDTRLPLSWRQDE
FDMLALQFNNVLDILENNLMAVRGVTDNIAHDLRTPLSHIRIGLEELAAKSPDEISEGCA
ILTEELDHCLATFDAMLSLTRIEEGQQTLDLQELSLAQLCTDLLDMADAVAESNEQTLSL
SLLSDHKIYGDKYLLFQALYNLVDNAMKYSGQGARIDIIQSGAKIKICDNGPGIPDDSKE
RVFERLVRLDPSRHLQGTGLGLSMVKAIMSRHNAQITLSDNHPGLVVTIQF