Protein Info for Shewana3_0217 in Shewanella sp. ANA-3

Name: rpmD
Annotation: 50S ribosomal protein L30 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 60 TIGR01308: ribosomal protein uL30" amino acids 6 to 60 (55 residues), 91.6 bits, see alignment E=9.6e-31 PF00327: Ribosomal_L30" amino acids 6 to 56 (51 residues), 83.3 bits, see alignment E=4.2e-28

Best Hits

Swiss-Prot: 100% identical to RL30_SHESM: 50S ribosomal protein L30 (rpmD) from Shewanella sp. (strain MR-4)

KEGG orthology group: K02907, large subunit ribosomal protein L30 (inferred from 98% identity to sbl:Sbal_4152)

MetaCyc: 79% identical to 50S ribosomal subunit protein L30 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L30p (L7e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KRP2 at UniProt or InterPro

Protein Sequence (60 amino acids)

>Shewana3_0217 50S ribosomal protein L30 (RefSeq) (Shewanella sp. ANA-3)
MATKTVKVTQTKSAIGRLPKHRATLTGLGLRRIGHTVELEDTPSVRGMINKVYYMVKVED