Protein Info for Shewana3_0168 in Shewanella sp. ANA-3

Annotation: Ig family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3544 transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 3321 to 3339 (19 residues), see Phobius details PF00041: fn3" amino acids 570 to 645 (76 residues), 34.4 bits, see alignment (E = 1.1e-11) amino acids 744 to 819 (76 residues), 27.2 bits, see alignment (E = 2e-09) amino acids 912 to 992 (81 residues), 32.8 bits, see alignment (E = 3.6e-11) amino acids 1092 to 1166 (75 residues), 27.7 bits, see alignment (E = 1.4e-09) PF17963: Big_9" amino acids 1171 to 1257 (87 residues), 25 bits, see alignment (E = 1.7e-08) amino acids 1263 to 1349 (87 residues), 27 bits, see alignment (E = 3.9e-09) amino acids 1355 to 1441 (87 residues), 27.3 bits, see alignment (E = 3.1e-09) amino acids 1447 to 1533 (87 residues), 26.6 bits, see alignment (E = 5e-09) amino acids 1539 to 1625 (87 residues), 26.6 bits, see alignment (E = 5e-09) amino acids 1631 to 1717 (87 residues), 26.7 bits, see alignment (E = 4.8e-09) amino acids 1723 to 1809 (87 residues), 25 bits, see alignment (E = 1.6e-08) amino acids 1815 to 1901 (87 residues), 27.7 bits, see alignment (E = 2.4e-09) amino acids 1907 to 1993 (87 residues), 27 bits, see alignment (E = 3.9e-09) amino acids 1999 to 2085 (87 residues), 27.3 bits, see alignment (E = 3.1e-09) amino acids 2091 to 2177 (87 residues), 27.3 bits, see alignment (E = 3.1e-09) amino acids 2183 to 2269 (87 residues), 27.3 bits, see alignment (E = 3.1e-09) amino acids 2275 to 2361 (87 residues), 26.7 bits, see alignment (E = 4.8e-09) amino acids 2459 to 2544 (86 residues), 64.8 bits, see alignment (E = 6.2e-21) amino acids 2549 to 2636 (88 residues), 55.1 bits, see alignment (E = 6.8e-18) amino acids 3130 to 3216 (87 residues), 74.1 bits, see alignment (E = 8e-24) amino acids 3221 to 3307 (87 residues), 70.2 bits, see alignment (E = 1.3e-22) PF05345: He_PIG" amino acids 1173 to 1260 (88 residues), 63.9 bits, see alignment (E = 8.7e-21) amino acids 1265 to 1352 (88 residues), 68.6 bits, see alignment (E = 2.9e-22) amino acids 1357 to 1444 (88 residues), 68.7 bits, see alignment (E = 2.8e-22) amino acids 1449 to 1536 (88 residues), 68.4 bits, see alignment (E = 3.3e-22) amino acids 1541 to 1628 (88 residues), 68.2 bits, see alignment (E = 3.9e-22) amino acids 1633 to 1720 (88 residues), 67.7 bits, see alignment (E = 5.5e-22) amino acids 1725 to 1812 (88 residues), 68.5 bits, see alignment (E = 3.2e-22) amino acids 1817 to 1904 (88 residues), 69.1 bits, see alignment (E = 2.1e-22) amino acids 1909 to 1996 (88 residues), 68.6 bits, see alignment (E = 2.9e-22) amino acids 2001 to 2088 (88 residues), 68.7 bits, see alignment (E = 2.8e-22) amino acids 2093 to 2180 (88 residues), 68.4 bits, see alignment (E = 3.3e-22) amino acids 2185 to 2272 (88 residues), 68.4 bits, see alignment (E = 3.3e-22) amino acids 2277 to 2364 (88 residues), 67.7 bits, see alignment (E = 5.5e-22) amino acids 2369 to 2456 (88 residues), 66.1 bits, see alignment (E = 1.8e-21) PF17803: Cadherin_4" amino acids 2450 to 2505 (56 residues), 42.8 bits, see alignment (E = 3.3e-14) amino acids 2539 to 2603 (65 residues), 50.6 bits, see alignment (E = 1.3e-16) amino acids 3129 to 3186 (58 residues), 43.9 bits, see alignment (E = 1.6e-14) amino acids 3214 to 3272 (59 residues), 41.2 bits, see alignment (E = 1.1e-13) PF17892: Cadherin_5" amino acids 2458 to 2546 (89 residues), 43.4 bits, see alignment (E = 1.4e-14) amino acids 2548 to 2638 (91 residues), 49.9 bits, see alignment (E = 1.3e-16) amino acids 3130 to 3219 (90 residues), 53.4 bits, see alignment (E = 1e-17) amino acids 3221 to 3308 (88 residues), 50.6 bits, see alignment (E = 7.8e-17) PF01389: OmpA_membrane" amino acids 3362 to 3526 (165 residues), 36.9 bits, see alignment 1.9e-12

Best Hits

Predicted SEED Role

"Fibronectin type III domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KRJ3 at UniProt or InterPro

Protein Sequence (3544 amino acids)

>Shewana3_0168 Ig family protein (RefSeq) (Shewanella sp. ANA-3)
MSRCKTGYPDDRYQTSACRFVIINTGIKWIARLCFAAVALLSINGYAASIPSNVTIDFNS
SGFIESADHGSNVFTQGDFKITYSAANWFQDTDDGQSNSAGVFAGMYSGVETITVETTSG
NEFDFVSFYINAFGGGFASVEGFRDGSSVGTQSTGSGFGQANGSFTVTLNNNPFDNVDKV
VITSNSGGYFDIFDSFVFNTVPDITPPTVSSVNSSTANGTYKLGDVITVQVNFSENVNVT
GTPQLTLETGSTDRTINYTSGTGTSTLNFSYTVQAGDTSADLDYVTTNSLTLNGGTIRDA
ASNNATLTLASPGAANSLGVNKALVIDGVVPTVASANSSTANGTYKVGDNISIQVNFSEV
VNVTGTPQLTLETGTTDRTINYASGSGSSTLTFSYTIQSGDNSSDLDYVATTSLSLNGGT
IRDAATNNATLTLASPGTANSLGANKALVVDGVVPSVTSTAPSGGAVSTDTSVDFTVNFS
ESVSNISTDDFALGTTGSATGTIASVSAGSGSSVTVTVSGITGNGTIKLNLNGSTNISDP
AGNAGPAAYTSGTPHTVAIPTAPDAPTIGVATAGDGQVSVAFTAPSNNGGSAITGYTVTS
SPDGITAGGNGFTSSPITVTGLTNGTAYTFTVTATNAIGTSAASATSGSSTPMTDQTITF
ANPGAQNFGSSPTLSATSTSGLTVSFSSSTTGVCTVNSTTLTFVTAGSCTIDADQVGDGS
THAATTVSRTFTVNAVVPGAPTIGTATAGDTQASISFIAPASFGGAAITGYTATANPGGA
TGTGAGSPITVTGLTNGVSYTFTVTATNSAGTGSASAASNSITPASPQTITFANPGAQSF
GTSPMLTATADSGLTVAFTSSTTSVCTVNSTTLTFVTAGSCTINADQPGNSAYLPAHQVS
RTFTVNPALPGAPTSVAAIAGDTQASVSFTDPVNTGGTSITGYTVSVSPPDVLPVNGVGS
PIVVNGLTNGQAYTFTVRADNAAGTGPASVVSNSITPKASQTITFNNPGAQNFGSTPTFS
ATSDSGLTPTFTSSTMGVCAITNDGAMTFLTVGTCTINADQSGNASYLPAAQVSRSFIVS
AVAPGAPTIGTATAGDAQASVSFTAPGFSGGAPISGYTLVSIPGGITASGGSSPIVISGL
TNGTSYSFTVAATNSAGLGSASSASNTVKPNGAPVINGTPTLTVNQGVSYSYTLVAMDSD
VGDSLTLSAVTLPSWLNFNAATGVLSGTPSNANVGSHAVLLRATDVDGLTADQSFTIVVA
NVNDAPTISSTALTSATQDAAYSYTLVAMDSDVGDSLTLSAVTLPSWLSFNAATGVLSGT
PTNANVGSHAVVLRATDGDGLTIDQSFTIVVTNVNDAPTISSTALTSATQDAAYSYTLVA
TDSDVGDSLTLSAVTLPSWLSFNAATGVLSGTPTNANVGSHAVLLRATDGDGLTIDQSFT
IVVANVNDAPTISSTALTSATQDAAYSYTLVAMDSDVGDSLTLSAVTLPSWLSFNAATGV
LSGTPTNANVGSHAVLLRATDGDGLTIDQSFTIVVANVNDAPTISSTALTSATQDAAYSY
TLVAMDSDVGDSLTLSAVTLPSWLSFNAATGVLSGTPTNANVGSHAVLLRATDGDGLTID
QSFTIVVTNVNDAPTISSTALTSATQDAAYSYTLVATDSDVGDSLTLSAVTLPSWLNFNA
ATGVLSGTPTNANVGSHAVVLRATDGDGLTIDQSFTIVVANVNDAPTISSTALTSATQDA
AYSYTLVATDSDVGDSLTLSAVTLPSWLSFNAATGVLSGTPTNANVGSHAVLLRATDVDG
LTADQSFTIVVANVNDAPTISSTALTSATQDAAYSYTLVATDSDVGDSLTLSAVTLPSWL
SFNAATGVLSGTPTNANVGSHAVVLRATDGDGLTIDQSFTIVVANVNDAPTISSTALTSA
TQDAAYSYTLVAMDSDVGDSLTLSAVTLPSWLSFNAATGVLSGTPTNANVGSHAVVLRAT
DGDGLTIDQSFTIVVTNVNDAPTISSTALTSATQDAAYSYTLVATDSDVGDSLTLSAVTL
PSWLSFNAATGVLSGTPTNANVGSHAVLLRATDGDGLTIDQSFTIVVANVNDAPTISSTA
LTSATQDAAYSYTLVATDSDVGDSLTLSAVTLPSWLSFNAATGVLSGTPTNANVGSHAVL
LRATDGDGLTIDQSFTIVVTNVNDAPTISSTALTSATQDAAYSYTLVATDSDVGDSLTLS
AVTLPSWLSFNAATGVLSGTPTNANVGSHAVLLRATDGDGLTIDQSFTIVVTNVNDAPTI
SSTALTSATQDAAYSYTLVATDSDVGDSLTLSAVTLPSWLNFNAATGVLSGTPTNANVGS
HAVVLRATDGDGLTIDQSFTIVVANVNDAPTISSTALTSATQDAAYSYTLVATDSDVGDS
VTLSAVTLPSWLSFNVATGVLSGTPSNANVGSHAVLLRATDVDGLTADQSFTIVVANVND
APIATNQTVTLEEDSSLMITLAAEDVDNDPLTYEITAQPASGTLEQHGSVWLYTPEKDFN
GTDSIGFIAKDAELSSEPATVTITVTPVNDDPQAVDDSYTLTSTPNDTYTLTVLANDVDV
DGDTLTIDGAAADIGSVQITSDGLSFTAPEAYVGPVALRYTISDGHKGRATAKVNVLIEG
TDSASQPVITLPDDVEVNATGLFTRVKLGFAKAVDRNGHPLPVSLVNKSLFFAPGNYLAY
WQAVDGEGNKAIKAQKVKVNPLISLSKDQVVAEGNQVTVSVHLNGEAPSYPLSIPFTVSG
SADSSDHDLVDGVVEITSGQMAEIHFTTLNDGVTEGDEEVLISLDPSLNLGSKQQTQVVI
TEANIAPQVSLAVTQAGQQQVIVAQNSGDVHIRATASDANEQDTLTLTWASGALSLQADS
TGMAFSPAAVTPGIYPVSLTATDDGSPVLSSTETVYIVVRPSLAALTSADTDGDLIPDVQ
EGYSDSDSDGIPDYLDANNDCNVMPEGELQPVYFLAEGQAGVCLRLGNIALRRGQSGMQL
QPEVVTEDALAANVGGIFDFIATGLPQQGQSYSLVLPQRSPVPANAVYRKFNAQAGWRDF
VIDANNTVASTEGERGFCPPPGDSRWTPGLTEGHWCVQLTIEDGGPNDDDGVANRTIVDP
SGVAVMLNGNHLPVANPDSAAIAWNQSIDVNVLANDTDSDGDSLSITQVISEFGTATVLA
DQRISYTPAADFIGTDVLVYSITDGKGGTASSELTIVVNGNTAPVTVDDSAATDDRTSLL
IDVLSNDTDVDGNTLTLLSATAQQGAVTIEANKLRYIPKTGFDGVDTVTYRISDGQGGEA
TGQVLITVKAYQEVIIDNKSGGGSMTLWGLAFILACAMLRRRELQRFALGSLLLLSVTQQ
AQATDWYVEGFIGQAQADKTLPELNVQVGEGQLINVDDSDTAFGVSLGYQWTPTVALELG
YADFGEGSAKIKGATLTPEQYHELVKTVTPVLADGVMLGLRFTLLQHQGWRFEVPVGLFH
WQADISSTMGNTRIKTDLDGTDWYAGVRFSYQFSDAWSVGLGYQYIDIEPNDLLSYQLNL
RYQF