Protein Info for Shewana3_0097 in Shewanella sp. ANA-3

Annotation: FAD-binding 9, siderophore-interacting domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 PF08021: FAD_binding_9" amino acids 11 to 52 (42 residues), 35.5 bits, see alignment 1e-12 amino acids 50 to 103 (54 residues), 64.9 bits, see alignment E=8.1e-22 PF04954: SIP" amino acids 111 to 228 (118 residues), 116.8 bits, see alignment E=8.5e-38

Best Hits

KEGG orthology group: K07229, (no description) (inferred from 100% identity to shn:Shewana3_0097)

Predicted SEED Role

"Utilization protein for unknown catechol-siderophore X" in subsystem Iron acquisition in Vibrio

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KRC3 at UniProt or InterPro

Protein Sequence (248 amino acids)

>Shewana3_0097 FAD-binding 9, siderophore-interacting domain-containing protein (RefSeq) (Shewanella sp. ANA-3)
MNRPAPRELTVIGKTQVTPHMLRITLGGDGFAGFPADQESAYIKLLFPQPGDERPLMRTY
TIRQQRMNEIDVDFVLHDTDGPASRWAKSTEIGDSIQIGGPGLKKLINLDAEWFLLAGDM
TALPAISVNLAQLPSNAVGYTVIEVLSEADIQPLVHPSNVQLHWVINPEADPEGKPLAER
IAQLPKLEGQGAVWLACEFSSMRALRKLLKQTYDLPKSHFYTSSYWKIGCNEGEHKLVKQ
QDEQLENQ