Protein Info for Shewana3_4327 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 171 transmembrane" amino acids 25 to 44 (20 residues), see Phobius details amino acids 68 to 95 (28 residues), see Phobius details amino acids 102 to 123 (22 residues), see Phobius details amino acids 147 to 166 (20 residues), see Phobius details PF04224: DUF417" amino acids 22 to 163 (142 residues), 111.4 bits, see alignment E=1.9e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_4327)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L3A9 at UniProt or InterPro

Protein Sequence (171 amino acids)

>Shewana3_4327 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MTIPEIENGVQTTNILSNNLGAKVTKFGIGGIYVAMTIIYLWFGGMKFTSYEANGIHGFV
SNSPLLSWMYSFLSIQGFSNFLGVLEISVGLLIAARVFSPKLAILGGVLSTGLFFTTLSF
MLTTPGVFEASLGFPAISVVPGQFLLKDLGLFVVSIFIVGTSLTALEHKNK