Protein Info for Shewana3_4307 in Shewanella sp. ANA-3

Annotation: transposase Tn3 family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 995 PF13700: DUF4158" amino acids 6 to 168 (163 residues), 95.4 bits, see alignment E=3.6e-31 PF01526: DDE_Tnp_Tn3" amino acids 591 to 977 (387 residues), 469.2 bits, see alignment E=9.1e-145

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_4307)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L391 at UniProt or InterPro

Protein Sequence (995 amino acids)

>Shewana3_4307 transposase Tn3 family protein (RefSeq) (Shewanella sp. ANA-3)
MAAIYQTAYPRIKSDITENELGDVYTPTQEDQKFALRHCKRTSTSFLGLLIQLKITQRLG
RFVNLDEIPKVIITHIKNQCRSRVTLKDLQTYYTSGAKDRHVKLIRRHLNIKAYDAAKTS
ELAQIWALEAATTKEALPDIINVTLEYLVKERYELPAFSVLERICQAARAEVNTRYYDQL
CGFLESESRQCINDILRSSTGLNGFGWSTLKNEPKRPTPRNIHAYIQYLEWLTSLQTLLP
TDLGLPPVKHQQFINEAKALDYAELMKLKLNKRLALVIVLIRHQYAQTLDNAADIFIKML
LKMDRSAQKLLEKYLADHQKQTDHLISVLSGTVKVYLDKPDSEAAFVPILGKNSDQLMQM
CEQYMAFAGNNYLPFMVRLYKKQRSTLFRTIEILNLASATEDKDLLNAFQFILTHKKRRT
EFLSIQSDPNDPSSRNVINIRWIRESWWKLVTGKSTKSAQVSEVNKTCFELCVFERIAEE
LSTGDLFIPYSETFDDYREQMITWEEYEAQLPTYCEEVGLVAGDTEFTTTLKKSMETSCR
KADSQFPEDELVRIENGNLIIGKPKPDQPLPEVEEIGALLRDRLDKINLLDVIINVEKWL
NLNKHFGPLSGFESRISDPELRFVLTVFCYGTNIGPTETVRSVQGVSRKQVAWLNLKRTT
EARLDKAIAKINSEYKKYRLIECWGAGSSVSADGKLWDLYEDNLLSEYHIRYGSYGGIAY
YHVSDTYIALFSRFIPCGVYEAIYILDGLLNDESDFNPDTVHGDTQAQSTPVFGLAYLLG
IKLMPRIRNIKDLSFYKPDRSMVLKHIQSLFKEPIKWDLIEKHYADMMRTAMSVKAGKIT
ASTILRRFGTKNRKNKLYFAFRELGRVVRTMFLLEYITDVDLRKTIQAATCKSEEFNEFA
RWLFFANGGKIPANLRHEQSKIVKYNHLLANFAILYNVNAMTEVFNQLKSEGYNITRDIM
AEFSPYHTEHLGRLGSFELDLTKQVKPMTFELLVD