Protein Info for Sama_3042 in Shewanella amazonensis SB2B

Annotation: L-sorbosone dehydrogenase, putative (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF07995: GSDH" amino acids 140 to 370 (231 residues), 56.8 bits, see alignment E=2.3e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_3042)

Predicted SEED Role

"L-sorbosone dehydrogenase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1SA38 at UniProt or InterPro

Protein Sequence (391 amino acids)

>Sama_3042 L-sorbosone dehydrogenase, putative (RefSeq) (Shewanella amazonensis SB2B)
MLPAHDNDNRLKRMLSNTHLGRMLIACLACIATQTQAEQTMTITVTKGFGITQYASELED
AKQLAVGDNGTLFVGSGKGGTITALVDSNNDGRVDRRYVVGKGLDNPEAIAFHKGHLYVA
LDEKILRYEEIEQRLRRPGRPKEIYSKLPGDTKKSARYMAFGPDGRLYIAIGSPCNVCES
ESPFGSVIAIDVDTGASEQIATGVRTVRGMDWDPQDGKLWFADIGRDWMGDNLPPDEINR
IDIKGMHYGFPYVHASDVIEPAYEKPENLKVVSPVYELPAHVSPMGMLFYRGEQFPAEYH
NQLLVAENGSWNRSSKIGYQIVVLTLDKGEVKRRETLISFLDGEFPVARPYGMALGADGS
LFISDDLKGNVYRFFYRHEAEEEAPTQEEQP