Protein Info for Sama_3030 in Shewanella amazonensis SB2B

Annotation: YjeF protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 496 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR00197: YjeF family N-terminal domain" amino acids 16 to 212 (197 residues), 113.5 bits, see alignment E=1e-36 PF03853: YjeF_N" amino acids 35 to 192 (158 residues), 123.7 bits, see alignment E=8e-40 TIGR00196: YjeF family C-terminal domain" amino acids 235 to 492 (258 residues), 225.5 bits, see alignment E=8.1e-71 PF01256: Carb_kinase" amino acids 250 to 485 (236 residues), 203.2 bits, see alignment E=4.8e-64

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_3030)

Predicted SEED Role

"NAD(P)HX epimerase / NAD(P)HX dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1SA26 at UniProt or InterPro

Protein Sequence (496 amino acids)

>Sama_3030 YjeF protein (RefSeq) (Shewanella amazonensis SB2B)
MSDSCLSLPQTLYSAAQVKAAEVNAVNSGACSLYELVEQAGSAAMAILESSEHCNLPTVI
LVGKGNNGADALVVARLLLTKGNRARVLLLGQGKTQEYVTAMAAFVEAGGVSEAFTESAL
EGADVIIDGVLGTGSCGELSDDLQQCFNAVNATPAWVLSLDMPSGVNADTGNVNPVAIQA
DVTLCFGGLKQGLFTSRARHFAGLIRYASLGLTDFLAQLPAEALRVDAGYLKDLLGRRPR
DSHKGKSGKVTIMGGNYGMAGAVRLAGEACLRAGAGLVTVISRPEHQLTVNANRPELMFW
GCELVDMEVYLRLGWADVLVLGPGLGKDDWGYNLYKAVGLSDKPCVLDADALNLLSKEPC
RQVNRVLTPHPGEAARLLGVSTAQIEVDRFAAVRQLQERFGGVVLLKGAGTLIYDGDSLV
VAPVGNPGLASGGCGDVLSGIIAALMAQGLDTMTATIAGVVVHGEAADLAALAGERGMLA
SDLMPFIRQLVNSDLI