Protein Info for Sama_3012 in Shewanella amazonensis SB2B

Annotation: esterase, putative (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 PF20434: BD-FAE" amino acids 73 to 160 (88 residues), 26.9 bits, see alignment E=5.1e-10 PF07859: Abhydrolase_3" amino acids 80 to 279 (200 residues), 171 bits, see alignment E=4.8e-54 PF10340: Say1_Mug180" amino acids 80 to 193 (114 residues), 34.5 bits, see alignment E=1.7e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_3012)

Predicted SEED Role

"Probable esterase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1SA08 at UniProt or InterPro

Protein Sequence (303 amino acids)

>Sama_3012 esterase, putative (RefSeq) (Shewanella amazonensis SB2B)
MASWQAKVLNSVLSYIAKPGMHARGARLSLADIRRRLEALDSRYLSWPKGLISDNLPLSH
SALIHNHLESAAAQRPRLAIFYVRGGGFCFKTPNAHGRFIADLCRELDADAYVPDYRLAP
EHPFPAPLEDVLDGYQQFLSLWSDPFVVMGDSAGGNLAMALLLQVKDMGLRLPECAVLLS
PALDLGITGDSERLLSADDPFFSIDSLLRLRGAYLQGANPMDVRASPLHGDLRGLPSMLL
LAGTRELLLEDSQRLAQRLKEAGTHVEHHFLAHMPHVFPLFEMLPEAREARELILEFIRR
RLM