Protein Info for Sama_2865 in Shewanella amazonensis SB2B

Annotation: HlyD family secretion protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 418 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details PF13437: HlyD_3" amino acids 239 to 325 (87 residues), 43.7 bits, see alignment E=5.8e-15

Best Hits

KEGG orthology group: K02005, HlyD family secretion protein (inferred from 100% identity to saz:Sama_2865)

Predicted SEED Role

"ABC transporter permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S9L1 at UniProt or InterPro

Protein Sequence (418 amino acids)

>Sama_2865 HlyD family secretion protein (RefSeq) (Shewanella amazonensis SB2B)
MIRDTSGQDRIVAPNKYRRIGWIAGGVALFAIAAAWAMGNSGISAGHSVKRSDMVTATIT
RGTLVRDIVSNGKIVAANAPIMYASAEGMVTLLAKPGDTVSVGQALATIDSPLLTNALAQ
EQARLAGLEGEVERATLSARREQLSARQVLDTARVELEAAERESRRGDLLIAKELISRID
FEKVKDDYKKAQLRFDHAEQEVALMADTQAFELKNKALELKRQQLVVDDLRRQVAALEVT
APVDGIIGNWLTEQKARLSRGQAILTVVDLSAFEAELAVSESYADELGLGMAVELDLGGV
KTTGTLASISPEVSRGEVLTRVRFDNVDGLKLRQNQRLSARILLENLENVLMVRRGSFVS
DGGNHVYCIKGDIASRTPIKLGARSVSHVQVLEGGEAGDEWIISGSDKMKQAEHVSLY