Protein Info for Sama_2355 in Shewanella amazonensis SB2B
Annotation: hypothetical protein (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
KEGG orthology group: None (inferred from 100% identity to saz:Sama_2355)Predicted SEED Role
"FIG01056973: hypothetical protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A1S854 at UniProt or InterPro
Protein Sequence (1116 amino acids)
>Sama_2355 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B) MLWVKGKLGQGYSGWQPYGAWSNPPQGVIDTLISAPGVTIKLPSGMGQNLSIEDAINPMR DLIRSTNKAVRITGLSGVGKTRIVQALFDETIGTGALDRTIAVYVDTGAEPEPSATAMLD RLIAEGRRAIMVLDNCPSELHSSLASKVSATSGKVSLITVEYDIRDDKPQTTEVIHIEAV GPEVAEQLVNRRFPGIGQINARRIAVFADGNARVALAIAERVEEGESLAQLSDTQLFNRL FEQRNHPDENLREQAEILSLVYSFSVSIPKDAHCELEVLSSLSGYSQTQLFRTVSKLLDR HVVQKRGYWRAILPHAIANKLAASALNSIPIEQLRLTFEAAGRQRLLLSFAHRLGLLHDH SVAKEIVEAWLQPDGLLGRMTELNEMSARMLAYIGPVAPEALLDRIEAELTASDFKGMKP SYNSRRTTILNLLQSLAYEPNAFERCVRLLIRVADFEEESNNYDAARNRITRFFQPYLSG THASLEQRIAIMNECLSSDVAGRRSLGFEMLSTALDGPPWSGSGMNEFGARPRDYGFYPN HYELVEWRNAFIEVAVRLGIAGNLDFEVPARQILADKFRIMWRQKGMRDKLVDAARQLHS HHPWNEGWKAVRSTIYIDYTKRKDKDGFEVLPENLVALEKELEPQDLISSILTFVLGQGH DYWALDPDFDHESTIKYGEVSKRLDAKALKLGEDFAASDHTLDELGPNLFSNNWMPYRAV FGRGLAKGALDRRVGWLLLVEQLKHQPGANRNFAVFCGFIDEIDSVDSLLAQELLDECAL HPELRHVLVDLHPQREFTETDLDRCIAILDDPDIHPHMYGPILWRGSYANLPRERVLNLA QRLLSKPNGDNVVLDALSMREHGKDKTVDTLGSDFRQIGLRAAIQRILRGGQDSGGSIDH HMECVVGAALRFDGNETEKLEWMNTIFAVVDERYGYVYAFENAIETTAALMPEAFLNRVF EGTEEQQHRRQFFISHEGLHGSPLAKINVEVLLEWCRARDDSSVWASVAAGISLWSNDGE LGIVTMSVSATRLLEAAPEPASILEVFAERVTPSSCSGSLADAMQVRADAIVTLVEHKSP EIAEAAKSVSAKLIERIKYEKLREQQIDEDREQRFE