Protein Info for Sama_2302 in Shewanella amazonensis SB2B

Name: fliS
Annotation: flagellar protein FliS (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 TIGR00208: flagellar protein FliS" amino acids 6 to 122 (117 residues), 102.6 bits, see alignment E=8.3e-34 PF02561: FliS" amino acids 6 to 122 (117 residues), 128.6 bits, see alignment E=7.1e-42

Best Hits

Swiss-Prot: 49% identical to FLIS_VIBCH: Flagellar secretion chaperone FliS (fliS) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K02422, flagellar protein FliS (inferred from 100% identity to saz:Sama_2302)

Predicted SEED Role

"Flagellar biosynthesis protein FliS" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S801 at UniProt or InterPro

Protein Sequence (136 amino acids)

>Sama_2302 flagellar protein FliS (RefSeq) (Shewanella amazonensis SB2B)
MRGSLQSYRKVSLESEIAVASPHRIIQMMFAGALERLAQSRYAIEQNDLTNKGIFINKAI
GIITGLSNSLNMEAGGEIAQNLGDLYDFMLRKISEANLNNDPQAIDDVMGLLRTLKEGWD
AIPADQHNITSHDEAV