Protein Info for Sama_2296 in Shewanella amazonensis SB2B

Name: fliG
Annotation: flagellar motor switch protein G (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 TIGR00207: flagellar motor switch protein FliG" amino acids 13 to 344 (332 residues), 326.4 bits, see alignment E=1.2e-101 PF14842: FliG_N" amino acids 16 to 117 (102 residues), 98.9 bits, see alignment E=4.7e-32 PF14841: FliG_M" amino acids 127 to 200 (74 residues), 97.4 bits, see alignment E=9.2e-32 PF01706: FliG_C" amino acids 229 to 336 (108 residues), 142 bits, see alignment E=1.6e-45

Best Hits

Swiss-Prot: 72% identical to FLIG_VIBCH: Flagellar motor switch protein FliG (fliG) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K02410, flagellar motor switch protein FliG (inferred from 100% identity to saz:Sama_2296)

Predicted SEED Role

"Flagellar motor switch protein FliG" in subsystem Bacterial Chemotaxis or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S7Z5 at UniProt or InterPro

Protein Sequence (345 amino acids)

>Sama_2296 flagellar motor switch protein G (RefSeq) (Shewanella amazonensis SB2B)
MAENKEKSESGFKVSNLSGVEKTAILLLSLSEADAASILKHLEPKQVQKVGMAMAALEDF
GQEKVIAVHKQFLDDIQKFSSIGFNSEEFVRKALTAALGEDKAGNLIEQIIMGSGAKGLD
SLKWMDARQVATIIQNEHPQIQTIVLSYLEPDQAAEIFSQFPENTRLDLLMRIANLEEVQ
PAALQELNDIMEKQFAGQGGAQAAKMGGLKAAANIMNYLDTAIESQLMETMRETDEEMAQ
QIQDLMFVFENLIDVDDRGIQTLLREVQQDVLMKALKGADEPLKDKILGNMSKRAAELLR
DDLEAMGPIRISEVELAQKEILSIARRLSDAGEIMLGGGGGEEFI